Articles | Volume 31, issue 4
https://doi.org/10.5194/npg-31-535-2024
© Author(s) 2024. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/npg-31-535-2024
© Author(s) 2024. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
13 Nov 2024
Research article |
| 13 Nov 2024
| 13 Nov 2024
Learning extreme vegetation response to climate drivers with recurrent neural networks
Francesco Martinuzzi
CORRESPONDING AUTHOR
Center for Scalable Data Analytics and Artificial Intelligence, Leipzig University, Leipzig, Germany
Institute for Earth System Science & Remote Sensing, Leipzig University, Leipzig, Germany
Remote Sensing Centre for Earth System Research, Leipzig University and UFZ, Leipzig, Germany
Miguel D. Mahecha
Center for Scalable Data Analytics and Artificial Intelligence, Leipzig University, Leipzig, Germany
Institute for Earth System Science & Remote Sensing, Leipzig University, Leipzig, Germany
Remote Sensing Centre for Earth System Research, Leipzig University and UFZ, Leipzig, Germany
German Centre for Integrative Biodiversity Research (iDiv), Leipzig, Germany
Gustau Camps-Valls
Image Processing Laboratory (IPL), Universitat de València, València, Spain
David Montero
Institute for Earth System Science & Remote Sensing, Leipzig University, Leipzig, Germany
Remote Sensing Centre for Earth System Research, Leipzig University and UFZ, Leipzig, Germany
German Centre for Integrative Biodiversity Research (iDiv), Leipzig, Germany
Tristan Williams
Image Processing Laboratory (IPL), Universitat de València, València, Spain
Karin Mora
Institute for Earth System Science & Remote Sensing, Leipzig University, Leipzig, Germany
Remote Sensing Centre for Earth System Research, Leipzig University and UFZ, Leipzig, Germany
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Guido Kraemer, Gustau Camps-Valls, Markus Reichstein, and Miguel D. Mahecha
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gradient. The resulting indicators can detect a large number of changes and
extremes in the Earth system.
Martin Jung, Christopher Schwalm, Mirco Migliavacca, Sophia Walther, Gustau Camps-Valls, Sujan Koirala, Peter Anthoni, Simon Besnard, Paul Bodesheim, Nuno Carvalhais, Frédéric Chevallier, Fabian Gans, Daniel S. Goll, Vanessa Haverd, Philipp Köhler, Kazuhito Ichii, Atul K. Jain, Junzhi Liu, Danica Lombardozzi, Julia E. M. S. Nabel, Jacob A. Nelson, Michael O'Sullivan, Martijn Pallandt, Dario Papale, Wouter Peters, Julia Pongratz, Christian Rödenbeck, Stephen Sitch, Gianluca Tramontana, Anthony Walker, Ulrich Weber, and Markus Reichstein
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Christopher Krich, Jakob Runge, Diego G. Miralles, Mirco Migliavacca, Oscar Perez-Priego, Tarek El-Madany, Arnaud Carrara, and Miguel D. Mahecha
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Miguel D. Mahecha, Fabian Gans, Gunnar Brandt, Rune Christiansen, Sarah E. Cornell, Normann Fomferra, Guido Kraemer, Jonas Peters, Paul Bodesheim, Gustau Camps-Valls, Jonathan F. Donges, Wouter Dorigo, Lina M. Estupinan-Suarez, Victor H. Gutierrez-Velez, Martin Gutwin, Martin Jung, Maria C. Londoño, Diego G. Miralles, Phillip Papastefanou, and Markus Reichstein
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Nora Linscheid, Lina M. Estupinan-Suarez, Alexander Brenning, Nuno Carvalhais, Felix Cremer, Fabian Gans, Anja Rammig, Markus Reichstein, Carlos A. Sierra, and Miguel D. Mahecha
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Milan Flach, Sebastian Sippel, Fabian Gans, Ana Bastos, Alexander Brenning, Markus Reichstein, and Miguel D. Mahecha
Biogeosciences, 15, 6067–6085, https://doi.org/10.5194/bg-15-6067-2018, https://doi.org/10.5194/bg-15-6067-2018, 2018
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Northern forests enhanced their productivity during and before the 2010 Russian mega heatwave. We scrutinize this issue with a novel type of multivariate extreme event detection approach. Forests compensate for 54 % of the carbon losses in agricultural ecosystems due to vulnerable conditions in spring and better water management in summer. The findings highlight the importance of forests in mitigating climate change, while not alleviating the consequences of extreme events for food security.
Paul Bodesheim, Martin Jung, Fabian Gans, Miguel D. Mahecha, and Markus Reichstein
Earth Syst. Sci. Data, 10, 1327–1365, https://doi.org/10.5194/essd-10-1327-2018, https://doi.org/10.5194/essd-10-1327-2018, 2018
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We provide continuous half-hourly carbon and energy fluxes for 2001 to 2014 at 0.5° spatial resolution, which allows for analyzing diurnal cycles globally. The data set contains four fluxes: gross primary production (GPP), net ecosystem exchange (NEE), latent heat (LE), and sensible heat (H). In addition, we provide a derived product that only contains monthly average diurnal cycles but which also enables us to study the important characteristics of subdaily patterns at a global scale.
Jannis von Buttlar, Jakob Zscheischler, Anja Rammig, Sebastian Sippel, Markus Reichstein, Alexander Knohl, Martin Jung, Olaf Menzer, M. Altaf Arain, Nina Buchmann, Alessandro Cescatti, Damiano Gianelle, Gerard Kiely, Beverly E. Law, Vincenzo Magliulo, Hank Margolis, Harry McCaughey, Lutz Merbold, Mirco Migliavacca, Leonardo Montagnani, Walter Oechel, Marian Pavelka, Matthias Peichl, Serge Rambal, Antonio Raschi, Russell L. Scott, Francesco P. Vaccari, Eva van Gorsel, Andrej Varlagin, Georg Wohlfahrt, and Miguel D. Mahecha
Biogeosciences, 15, 1293–1318, https://doi.org/10.5194/bg-15-1293-2018, https://doi.org/10.5194/bg-15-1293-2018, 2018
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Our work systematically quantifies extreme heat and drought event impacts on gross primary productivity (GPP) and ecosystem respiration globally across a wide range of ecosystems. We show that heat extremes typically increased mainly respiration whereas drought decreased both fluxes. Combined heat and drought extremes had opposing effects offsetting each other for respiration, but there were also strong reductions in GPP and hence the strongest reductions in the ecosystems carbon sink capacity.
Iulia Ilie, Peter Dittrich, Nuno Carvalhais, Martin Jung, Andreas Heinemeyer, Mirco Migliavacca, James I. L. Morison, Sebastian Sippel, Jens-Arne Subke, Matthew Wilkinson, and Miguel D. Mahecha
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Accurate representation of land-atmosphere carbon fluxes is essential for future climate projections, although some of the responses of CO2 fluxes to climate often remain uncertain. The increase in available data allows for new approaches in their modelling. We automatically developed models for ecosystem and soil carbon respiration using a machine learning approach. When compared with established respiration models, we found that they are better in prediction as well as offering new insights.
Miguel D. Mahecha, Fabian Gans, Sebastian Sippel, Jonathan F. Donges, Thomas Kaminski, Stefan Metzger, Mirco Migliavacca, Dario Papale, Anja Rammig, and Jakob Zscheischler
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Jakob Zscheischler, Miguel D. Mahecha, Valerio Avitabile, Leonardo Calle, Nuno Carvalhais, Philippe Ciais, Fabian Gans, Nicolas Gruber, Jens Hartmann, Martin Herold, Kazuhito Ichii, Martin Jung, Peter Landschützer, Goulven G. Laruelle, Ronny Lauerwald, Dario Papale, Philippe Peylin, Benjamin Poulter, Deepak Ray, Pierre Regnier, Christian Rödenbeck, Rosa M. Roman-Cuesta, Christopher Schwalm, Gianluca Tramontana, Alexandra Tyukavina, Riccardo Valentini, Guido van der Werf, Tristram O. West, Julie E. Wolf, and Markus Reichstein
Biogeosciences, 14, 3685–3703, https://doi.org/10.5194/bg-14-3685-2017, https://doi.org/10.5194/bg-14-3685-2017, 2017
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Milan Flach, Fabian Gans, Alexander Brenning, Joachim Denzler, Markus Reichstein, Erik Rodner, Sebastian Bathiany, Paul Bodesheim, Yanira Guanche, Sebastian Sippel, and Miguel D. Mahecha
Earth Syst. Dynam., 8, 677–696, https://doi.org/10.5194/esd-8-677-2017, https://doi.org/10.5194/esd-8-677-2017, 2017
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Sebastian Sippel, Jakob Zscheischler, Miguel D. Mahecha, Rene Orth, Markus Reichstein, Martha Vogel, and Sonia I. Seneviratne
Earth Syst. Dynam., 8, 387–403, https://doi.org/10.5194/esd-8-387-2017, https://doi.org/10.5194/esd-8-387-2017, 2017
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Sebastian Sippel, Jakob Zscheischler, Martin Heimann, Holger Lange, Miguel D. Mahecha, Geert Jan van Oldenborgh, Friederike E. L. Otto, and Markus Reichstein
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Gianluca Tramontana, Martin Jung, Christopher R. Schwalm, Kazuhito Ichii, Gustau Camps-Valls, Botond Ráduly, Markus Reichstein, M. Altaf Arain, Alessandro Cescatti, Gerard Kiely, Lutz Merbold, Penelope Serrano-Ortiz, Sven Sickert, Sebastian Wolf, and Dario Papale
Biogeosciences, 13, 4291–4313, https://doi.org/10.5194/bg-13-4291-2016, https://doi.org/10.5194/bg-13-4291-2016, 2016
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We have evaluated 11 machine learning (ML) methods and two complementary drivers' setup to estimate the carbon dioxide (CO2) and energy exchanges between land ecosystems and atmosphere. Obtained results have shown high consistency among ML and high capability to estimate the spatial and seasonal variability of the target fluxes. The results were good for all the ecosystems, with limitations to the ones in the extreme environments (cold, hot) or less represented in the training data (tropics).
S. Sippel, F. E. L. Otto, M. Forkel, M. R. Allen, B. P. Guillod, M. Heimann, M. Reichstein, S. I. Seneviratne, K. Thonicke, and M. D. Mahecha
Earth Syst. Dynam., 7, 71–88, https://doi.org/10.5194/esd-7-71-2016, https://doi.org/10.5194/esd-7-71-2016, 2016
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We introduce a novel technique to bias correct climate model output for impact simulations that preserves its physical consistency and multivariate structure. The methodology considerably improves the representation of extremes in climatic variables relative to conventional bias correction strategies. Illustrative simulations of biosphere–atmosphere carbon and water fluxes with a biosphere model (LPJmL) show that the novel technique can be usefully applied to drive climate impact models.
A. Rammig, M. Wiedermann, J. F. Donges, F. Babst, W. von Bloh, D. Frank, K. Thonicke, and M. D. Mahecha
Biogeosciences, 12, 373–385, https://doi.org/10.5194/bg-12-373-2015, https://doi.org/10.5194/bg-12-373-2015, 2015
X. Wu, F. Babst, P. Ciais, D. Frank, M. Reichstein, M. Wattenbach, C. Zang, and M. D. Mahecha
Biogeosciences, 11, 3057–3068, https://doi.org/10.5194/bg-11-3057-2014, https://doi.org/10.5194/bg-11-3057-2014, 2014
J. Zscheischler, M. Reichstein, S. Harmeling, A. Rammig, E. Tomelleri, and M. D. Mahecha
Biogeosciences, 11, 2909–2924, https://doi.org/10.5194/bg-11-2909-2014, https://doi.org/10.5194/bg-11-2909-2014, 2014
J. v. Buttlar, J. Zscheischler, and M. D. Mahecha
Nonlin. Processes Geophys., 21, 203–215, https://doi.org/10.5194/npg-21-203-2014, https://doi.org/10.5194/npg-21-203-2014, 2014
Related subject area
Subject: Time series, machine learning, networks, stochastic processes, extreme events | Topic: Climate, atmosphere, ocean, hydrology, cryosphere, biosphere | Techniques: Big data and artificial intelligence
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We train neural networks as denoising diffusion models for state generation in the Lorenz 1963 system and demonstrate that they learn an internal representation of the system. We make use of this learned representation and the pre-trained model in two downstream tasks: surrogate modelling and ensemble generation. For both tasks, the diffusion model can outperform other more common approaches. Thus, we see a potential of representation learning with diffusion models for dynamical systems.
Susana Barbosa, Maria Eduarda Silva, and Denis-Didier Rousseau
Nonlin. Processes Geophys., 31, 433–447, https://doi.org/10.5194/npg-31-433-2024, https://doi.org/10.5194/npg-31-433-2024, 2024
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The characterisation of abrupt transitions in palaeoclimate records allows understanding of millennial climate variability and potential tipping points in the context of current climate change. In our study an algorithmic method, the matrix profile, is employed to characterise abrupt warmings designated as Dansgaard–Oeschger (DO) events and to identify the most similar transitions in the palaeoclimate time series.
John Bjørnar Bremnes, Thomas N. Nipen, and Ivar A. Seierstad
Nonlin. Processes Geophys., 31, 247–257, https://doi.org/10.5194/npg-31-247-2024, https://doi.org/10.5194/npg-31-247-2024, 2024
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During the last 2 years, tremendous progress has been made in global data-driven weather models trained on reanalysis data. In this study, the Pangu-Weather model is compared to several numerical weather prediction models with and without probabilistic post-processing for temperature and wind speed forecasting. The results confirm that global data-driven models are promising for operational weather forecasting and that post-processing can improve these forecasts considerably.
Bin Shi and Junjie Ma
Nonlin. Processes Geophys., 31, 165–174, https://doi.org/10.5194/npg-31-165-2024, https://doi.org/10.5194/npg-31-165-2024, 2024
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Different from traditional deterministic optimization algorithms, we implement the sampling method to compute the conditional nonlinear optimal perturbations (CNOPs) in the realistic and predictive coupled ocean–atmosphere model, which reduces the first-order information to the zeroth-order one, avoiding the high-cost computation of the gradient. The numerical performance highlights the importance of stochastic optimization algorithms to compute CNOPs and capture initial optimal precursors.
David Docquier, Giorgia Di Capua, Reik V. Donner, Carlos A. L. Pires, Amélie Simon, and Stéphane Vannitsem
Nonlin. Processes Geophys., 31, 115–136, https://doi.org/10.5194/npg-31-115-2024, https://doi.org/10.5194/npg-31-115-2024, 2024
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Identifying causes of specific processes is crucial in order to better understand our climate system. Traditionally, correlation analyses have been used to identify cause–effect relationships in climate studies. However, correlation does not imply causation, which justifies the need to use causal methods. We compare two independent causal methods and show that these are superior to classical correlation analyses. We also find some interesting differences between the two methods.
Louis Le Toumelin, Isabelle Gouttevin, Clovis Galiez, and Nora Helbig
Nonlin. Processes Geophys., 31, 75–97, https://doi.org/10.5194/npg-31-75-2024, https://doi.org/10.5194/npg-31-75-2024, 2024
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Forecasting wind fields over mountains is of high importance for several applications and particularly for understanding how wind erodes and disperses snow. Forecasters rely on operational wind forecasts over mountains, which are currently only available on kilometric scales. These forecasts can also be affected by errors of diverse origins. Here we introduce a new strategy based on artificial intelligence to correct large-scale wind forecasts in mountains and increase their spatial resolution.
Florian Dupuy, Pierre Durand, and Thierry Hedde
Nonlin. Processes Geophys., 30, 553–570, https://doi.org/10.5194/npg-30-553-2023, https://doi.org/10.5194/npg-30-553-2023, 2023
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Forecasting near-surface winds over complex terrain requires high-resolution numerical weather prediction models, which drastically increase the duration of simulations and hinder them in running on a routine basis. A faster alternative is statistical downscaling. We explore different ways of calculating near-surface wind speed and direction using artificial intelligence algorithms based on various convolutional neural networks in order to find the best approach for wind downscaling.
Valérian Jacques-Dumas, René M. van Westen, Freddy Bouchet, and Henk A. Dijkstra
Nonlin. Processes Geophys., 30, 195–216, https://doi.org/10.5194/npg-30-195-2023, https://doi.org/10.5194/npg-30-195-2023, 2023
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Computing the probability of occurrence of rare events is relevant because of their high impact but also difficult due to the lack of data. Rare event algorithms are designed for that task, but their efficiency relies on a score function that is hard to compute. We compare four methods that compute this function from data and measure their performance to assess which one would be best suited to be applied to a climate model. We find neural networks to be most robust and flexible for this task.
Domenico Giaquinto, Warner Marzocchi, and Jürgen Kurths
Nonlin. Processes Geophys., 30, 167–181, https://doi.org/10.5194/npg-30-167-2023, https://doi.org/10.5194/npg-30-167-2023, 2023
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Despite being among the most severe climate extremes, it is still challenging to assess droughts’ features for specific regions. In this paper we study meteorological droughts in Europe using concepts derived from climate network theory. By exploring the synchronization in droughts occurrences across the continent we unveil regional clusters which are individually examined to identify droughts’ geographical propagation and source–sink systems, which could potentially support droughts’ forecast.
Joko Sampurno, Valentin Vallaeys, Randy Ardianto, and Emmanuel Hanert
Nonlin. Processes Geophys., 29, 301–315, https://doi.org/10.5194/npg-29-301-2022, https://doi.org/10.5194/npg-29-301-2022, 2022
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In this study, we successfully built and evaluated machine learning models for predicting water level dynamics as a proxy for compound flooding hazards in a data-scarce delta. The issues that we tackled here are data scarcity and low computational resources for building flood forecasting models. The proposed approach is suitable for use by local water management agencies in developing countries that encounter these issues.
Benjamin Walleshauser and Erik Bollt
Nonlin. Processes Geophys., 29, 255–264, https://doi.org/10.5194/npg-29-255-2022, https://doi.org/10.5194/npg-29-255-2022, 2022
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As sea surface temperature (SST) is vital for understanding the greater climate of the Earth and is also an important variable in weather prediction, we propose a model that effectively capitalizes on the reduced complexity of machine learning models while still being able to efficiently predict over a large spatial domain. We find that it is proficient at predicting the SST at specific locations as well as over the greater domain of the Earth’s oceans.
Raphael Kriegmair, Yvonne Ruckstuhl, Stephan Rasp, and George Craig
Nonlin. Processes Geophys., 29, 171–181, https://doi.org/10.5194/npg-29-171-2022, https://doi.org/10.5194/npg-29-171-2022, 2022
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Our regional numerical weather prediction models run at kilometer-scale resolutions. Processes that occur at smaller scales not yet resolved contribute significantly to the atmospheric flow. We use a neural network (NN) to represent the unresolved part of physical process such as cumulus clouds. We test this approach on a simplified, yet representative, 1D model and find that the NN corrections vastly improve the model forecast up to a couple of days.
Bo Christiansen
Nonlin. Processes Geophys., 28, 409–422, https://doi.org/10.5194/npg-28-409-2021, https://doi.org/10.5194/npg-28-409-2021, 2021
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In geophysics we often need to analyse large samples of high-dimensional fields. Fortunately but counterintuitively, such high dimensionality can be a blessing, and we demonstrate how this allows simple analytical results to be derived. These results include estimates of correlations between sample members and how the sample mean depends on the sample size. We show that the properties of high dimensionality with success can be applied to climate fields, such as those from ensemble modelling.
Camille Besombes, Olivier Pannekoucke, Corentin Lapeyre, Benjamin Sanderson, and Olivier Thual
Nonlin. Processes Geophys., 28, 347–370, https://doi.org/10.5194/npg-28-347-2021, https://doi.org/10.5194/npg-28-347-2021, 2021
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This paper investigates the potential of a type of deep generative neural network to produce realistic weather situations when trained from the climate of a general circulation model. The generator represents the climate in a compact latent space. It is able to reproduce many aspects of the targeted multivariate distribution. Some properties of our method open new perspectives such as the exploration of the extremes close to a given state or how to connect two realistic weather states.
Gerd Schädler and Marcus Breil
Nonlin. Processes Geophys., 28, 231–245, https://doi.org/10.5194/npg-28-231-2021, https://doi.org/10.5194/npg-28-231-2021, 2021
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We used regional climate networks (RCNs) to identify past heatwaves and droughts in Germany. RCNs provide information for whole areas and can provide many details of extreme events. The RCNs were constructed on the grid of the E-OBS data set. Time series correlation was used to construct the networks. Network metrics were compared to standard extreme indices and differed considerably between normal and extreme years. The results show that RCNs can identify severe and moderate extremes.
Jonathan M. Lilly and Paula Pérez-Brunius
Nonlin. Processes Geophys., 28, 181–212, https://doi.org/10.5194/npg-28-181-2021, https://doi.org/10.5194/npg-28-181-2021, 2021
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Long-lived eddies are an important part of the ocean circulation. Here a dataset for studying eddies in the Gulf of Mexico is created through the analysis of trajectories of drifting instruments. The method involves the identification of quasi-periodic signals, characteristic of particles trapped in eddies, from the displacement records, followed by the creation of a measure of statistical significance. It is expected that this dataset will be of use to other authors studying this region.
Cristian Lussana, Thomas N. Nipen, Ivar A. Seierstad, and Christoffer A. Elo
Nonlin. Processes Geophys., 28, 61–91, https://doi.org/10.5194/npg-28-61-2021, https://doi.org/10.5194/npg-28-61-2021, 2021
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An unprecedented amount of rainfall data is available nowadays, such as ensemble model output, weather radar estimates, and in situ observations from networks of both traditional and opportunistic sensors. Nevertheless, the exact amount of precipitation, to some extent, eludes our knowledge. The objective of our study is precipitation reconstruction through the combination of numerical model outputs with observations from multiple data sources.
Dylan Harries and Terence J. O'Kane
Nonlin. Processes Geophys., 27, 453–471, https://doi.org/10.5194/npg-27-453-2020, https://doi.org/10.5194/npg-27-453-2020, 2020
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Different dimension reduction methods may produce profoundly different low-dimensional representations of multiscale systems. We perform a set of case studies to investigate these differences. When a clear scale separation is present, similar bases are obtained using all methods, but when this is not the case some methods may produce representations that are poorly suited for describing features of interest, highlighting the importance of a careful choice of method when designing analyses.
Jaqueline Lekscha and Reik V. Donner
Nonlin. Processes Geophys., 27, 261–275, https://doi.org/10.5194/npg-27-261-2020, https://doi.org/10.5194/npg-27-261-2020, 2020
Moritz N. Lang, Sebastian Lerch, Georg J. Mayr, Thorsten Simon, Reto Stauffer, and Achim Zeileis
Nonlin. Processes Geophys., 27, 23–34, https://doi.org/10.5194/npg-27-23-2020, https://doi.org/10.5194/npg-27-23-2020, 2020
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Statistical post-processing aims to increase the predictive skill of probabilistic ensemble weather forecasts by learning the statistical relation between historical pairs of observations and ensemble forecasts within a given training data set. This study compares four different training schemes and shows that including multiple years of data in the training set typically yields a more stable post-processing while it loses the ability to quickly adjust to temporal changes in the underlying data.
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Short summary
We investigated how machine learning can forecast extreme vegetation responses to weather. Examining four models, no single one stood out as the best, though "echo state networks" showed minor advantages. Our results indicate that while these tools are able to generally model vegetation states, they face challenges under extreme conditions. This underlines the potential of artificial intelligence in ecosystem modeling, also pinpointing areas that need further research.
We investigated how machine learning can forecast extreme vegetation responses to weather....
