the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
A prototype stochastic parameterization of regime behaviour in the stably stratified atmospheric boundary layer
Amber M. Holdsworth
Adam H. Monahan
Recent research has demonstrated that hidden Markov model (HMM) analysis is an effective tool to classify atmospheric observations of the stably stratified nocturnal boundary layer (SBL) into weakly stable (wSBL) and very stable (vSBL) regimes. Here we consider the development of explicitly stochastic representations of SBL regime dynamics. First, we analyze whether HMMbased SBL regime statistics (the occurrence of regime transitions, subsequent transitions after the first, and very persistent nights) can be accurately represented by “freely running” stationary Markov chains (FSMCs). Our results show that despite the HMMestimated regime statistics being relatively insensitive to the HMM transition probabilities, these statistics cannot all simultaneously be captured by a FSMC. Furthermore, by construction a FSMC cannot capture the observed nonMarkov regime duration distributions. Using the HMM classification of data into wSBL and vSBL regimes, statedependent transition probabilities conditioned on the bulk Richardson number (Ri_{B}) or the stratification are investigated. We find that conditioning on stratification produces more robust results than conditioning on Ri_{B}. A prototype explicitly stochastic parameterization is developed based on stratificationdependent transition probabilities, in which turbulence pulses (representing intermittent turbulence events) are added during vSBL conditions. Experiments using an idealized singlecolumn model demonstrate that such an approach can simulate realisticlooking SBL regime dynamics.
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A common classification scheme of the stably stratified atmospheric boundary layer (SBL) distinguishes between two distinct regimes, denoted the weakly and very stable boundary layers (respectively, wSBL and vSBL, e.g. Mahrt, 1998a, 2014; Acevedo and Fitzjarrald, 2003; van Hooijdonk et al., 2015; Monahan et al., 2015; Vercauteren and Klein, 2015; Acevedo et al., 2016; Vignon et al., 2017b; Abraham and Monahan, 2019b, c, hereafter AM19a, AM19b, and AM19c). In this classification scheme the wSBL is characterized by weak stratification, strong wind, and shears which produce sufficient turbulence kinetic energy (TKE) to sustain continuous vertical mixing despite the stable stratification (e.g. van de Wiel et al., 2012). The vSBL is characterized by strong stratification, low wind speeds, and weak or intermittent turbulence such that vertical coupling of the atmospheric layers weakens. Very stable boundary layers are also sometimes found to display socalled upsidedown turbulence, in which TKE is generated aloft by strong shears and then transported downwards. Observational data as well as simulations show that, to a good approximation in horizontally homogenous conditions, the wSBL conforms to the classical understanding of turbulence in the atmospheric boundary layer, with turbulence quantities decreasing with height and nearsurface profiles which are well described by Monin–Obukhov similarity theory (MOST; e.g. Sorbjan, 1986; Mahrt, 1998a, b, 2014; Pahlow et al., 2001; Grachev et al., 2005, 2013). In the vSBL, on the other hand, turbulence profiles can decouple from the surface (Banta et al., 2007) and MOST breaks down (e.g. Derbyshire, 1999; Banta et al., 2007; Williams et al., 2013; Mahrt, 2011; Optis et al., 2015). Regime structures and transitions are poorly represented in weather and climate models, due both to coarse resolution (vertical and horizontal) and to an imperfect understanding of the diverse physical processes governing the SBL, particularly with regard to the vSBL to wSBL transitions (e.g. Holtslag et al., 2013; Mahrt, 2014). In this study we first analyze how well the statistics of SBL regime occupation and regime transitions can be described by a tworegime system, with the goal of using this information to develop a prototype explicitly stochastic parameterization of turbulence in the SBL for models of weather and climate.
As transitions between the two SBL regimes are a common feature of SBL dynamics around the globe (AM19b), a representation of the effect of these dynamics in weather and climate models is needed. The regime transitions, however, are associated with a range of different mechanisms. Over land, the wSBL to vSBL transition (which for simplicity we denote the collapse of turbulence even though turbulence does not cease entirely) is normally caused by radiative cooling at the surface increasing the inversion strength and suppressing vertical turbulent fluxes of momentum and heat. This process is relatively well understood and has been examined using conceptual and idealized singlecolumn models (van de Wiel et al., 2007, 2017; Holdsworth et al., 2016; Holdsworth and Monahan, 2019; Maroneze et al., 2019) or direct numerical simulations of stratified channel flows (Donda et al., 2015; van Hooijdonk et al., 2017) and atmospheric boundary layers (e.g. Flores and Riley, 2011; Ansorge and Mellado, 2014). Radiative cooling leads to very shallow boundary layers which are typically not resolved well in largescale circulation models. Another mechanism for the wSBL to vSBL transition of particular importance over water is the advection of warm air aloft (AM19c), producing vSBL conditions which are not as shallow as those driven by radiative fluxes.
The vSBL to wSBL transition (which we denote the recovery of turbulence) is less well understood. Mechanisms by which turbulence recovers include the buildup of shear resulting in instabilities or an increase in cloud cover weakening the stratification by increasing the downwelling longwave radiation (AM19b). Another potential class of processes initiating these transitions is associated with intermittent turbulence events (e.g. Mahrt, 2014, and references within), which have been found to dominate the turbulent transport in vSBL conditions (Nappo, 1991; Coulter and Doran, 2002; Doran, 2004; Basu et al., 2006; Acevedo et al., 2006; Williams et al., 2013). Intermittent turbulence arises from a range of different phenomena, such as breaking gravity waves or solitary waves (Mauritsen and Svensson, 2007; Sun et al., 2012), density currents (Sun et al., 2002), microfronts (Mahrt, 2010), Kelvin–Helmholtz instabilities interacting with the turbulent mixing (Blumen et al., 2001; Newsom and Banta, 2003; Sun et al., 2012), or shear instabilities induced from internal wave propagation (Sun et al., 2004, 2015; Zilitinkevich et al., 2008). It has also been suggested from direct numerical simulations that intermittency can arise as an intrinsic mode of the nonlinear equations in the absence of external perturbations of the mean flow (Ansorge and Mellado, 2014). Regardless of which process causes the recovery of turbulence, all phenomena are subgrid scale in stateoftheart weather and climate models and are typically not included explicitly through processbased deterministic parameterizations.
Although processes in the SBL have been extensively studied, substantial errors of SBL representation persist in weather and climate models (Dethloff et al., 2001; Gerbig et al., 2008; Bechtold et al., 2008; Medeiros et al., 2011; Kyselý and Plavcová, 2012; Tastula et al., 2012; Bosveld et al., 2014; Sterk et al., 2013, 2015). Misrepresentation of the SBL includes unrealistic decoupling of the atmosphere from the surface (due to misrepresentations of TKE in the vSBL), resulting in runaway surface cooling (Mahrt, 1998b; Walsh et al., 2008), underestimation of the wind turning with height within the boundary layer (Svensson and Holtslag, 2009), overestimation of the boundary layer height (Bosveld et al., 2014), underestimated lowlevel jet speed (Baas et al., 2009), and underestimation of nearsurface wind speed and temperature gradients or their diurnal cycle (Edwards et al., 2011).
Accurate simulations of these nearsurface properties is particularly important for global and regional weather forecasts of vertical temperature structures which control the formation of fog and frost (Walters et al., 2007; Holtslag et al., 2013). More accurate simulations of the SBL regime behaviour are also important for better representations of surface wind variability and wind extremes (He et al., 2010, 2012; Monahan et al., 2011); simulation and assessment of pollutant dispersal, air quality (Salmond and McKendry, 2005; Tomas et al., 2016), harvesting of wind energy (Storm and Basu, 2010; Zhou and Chow, 2012; Dörenkämper et al., 2015); and agricultural forecasts (Prabha et al., 2011; Holtslag et al., 2013).
Global and regional weather and climate models often use an artificially enhanced surface exchange under stable conditions in order to improve simulations of the largescale flow (Holtslag et al., 2013). This approach led to the introduction of longtailed stability functions and minimum background TKE values that are not supported by observations. In such representations, turbulence is artificially sustained under very stable conditions and the tworegime characteristic of the SBL is suppressed, biasing nearsurface winds and temperature profiles. Without such parameterizations the nocturnal boundary layers can experience a single turbulence collapse which persists for the entire night. Although the longtailed stability functions in relatively coarseresolution models are designed to mimic the grid box mean of fluxes over many subgridscale wSBL and vSBL patches, with increasing horizontal and vertical resolution more accurate processbased parameterizations are necessary. The occurrence of vSBL to wSBL transitions does not appear to depend deterministically on internal or external state variables (AM19a,b), indicating that parameterizations of the effects of these kinds of transitions in weather and climate models may be required to be explicitly stochastic (e.g. He et al., 2012; Mahrt, 2014). In particular, phenomena such as intermittent turbulence events will likely rely on stochastic parameterizations as their structure and propagation are found to be only weakly dependent on mean states (e.g. Rees and Mobbs, 1988; Lang et al., 2018). Stochastic subgridscale parameterizations of SBL processes have been proposed to account for the missing variability in the SBL and improve both climate mean states and forecast ensemble spread (e.g. He et al., 2012; Mahrt, 2014; Nappo et al., 2014; Vercauteren and Klein, 2015). For instance, Vercauteren and Klein (2015) propose an additional Markovian system to switch between times of strong and weak influence of shorttimescale, nonturbulent motions on TKE production in the vSBL.
In AM19a,b,c it was demonstrated that hidden Markov model (HMM) analysis of Reynoldsaveraged mean states can be used as a tool to analyze the SBL regimes at tower sites in many different settings. Independent of the surface type, the climatological setting, or the complexity of the surrounding topography, two distinct regimes in the state variable spaces of Reynoldsaveraged mean states and turbulence are evident. As the HMM analyses provide climatological (that is, based on longterm statistics) transition probability matrices for a tworegime Markovian system, a natural approach to developing stochastic parameterizations of SBL regime dynamics is to investigate whether these can be based on “freely running” stationary Markov chains (FSMCs) using these transition matrices. The first goal of this study is to determine whether climatological Markovian transition probability matrices, which are by construction independent of the state of the SBL, are adequate for simulations of the SBL regime dynamics. While the HMM analyses presented in AM19a assume stationary Markov regime dynamics, statistical analyses of the estimated regime sequences show clear evidence of elevated probability of turbulence collapse close to sunset (AM19b). Furthermore, probability distributions of event durations demonstrate a localized maximum corresponding to a typical recovery time of 1 to 2 h after transitions, during which a subsequent transition is unlikely. This structure is indicative of nonMarkov behaviour (AM19b). Because of these nonstationary and nonMarkov behaviours, a FSMC will never exactly capture all aspects of SBL regime dynamics. However, it is a parsimonious model and might be sufficient to reproduce most statistics of interest.
In order to investigate the potential of FSMCbased parameterizations, we first analyze how well they can characterize the HMMbased regime statistics. As part of this analysis we consider the sensitivity of the regime sequence estimated by the HMM to perturbations of the persistence probabilities, allowing for a quantification of which ranges of persistence probabilities accurately describe SBL regime statistics in HMM analyses. By comparing this sensitivity analysis with a sensitivity analysis of regime statistics to varying persistence probabilities in a FSMC, we quantify which ranges of persistence probabilities are consistent with both SBL regime statistics derived from an HMM analysis and SBL regime statistics simulated in a FSMC. As we demonstrate that FSMCs cannot adequately simulate all SBL regime statistics of interest, we then investigate the state dependence of observed SBL regime transition probabilities. Finally, we develop a pragmatic prototype of an explicitly stochastic parameterization using the derived statedependent transition probabilities and present preliminary tests in an idealized singlecolumn model (SCM; Holdsworth and Monahan, 2019). The study is organized as follows. First a short review of the observational data used in the HMM analysis is given in Sect. 2, followed by a brief review of the HMM application to the SBL (Sect. 3). Results of simulating statistics in FSMC are shown in Sect. 4, followed by the description of the prototype statedependent stochastic parameterization and test simulations in Sect. 5. Conclusions follow in Sect. 6.
Only a brief summary is presented here because the observational data used in this study have been discussed in detail in AM19a. Observational data sets from nine different research towers measuring standard Reynoldsaveraged meteorological state variables with a time resolution of 30 min or finer are considered (Table 1). The observational levels of wind speeds and temperatures determine the reference state variable sets which are used in the HMM analyses to classify the data into SBL regimes (cf. AM19a, Table 1). Substantial differences among the nine experimental sites exist in terms of their surface conditions, surrounding topography, and meteorological setting. As a simple classification scheme, we distinguish between landbased, glacial, and seabased stations.
Kaimal and Gaynor (1983)Blumen (1984)Ulden and Wieringa (1996)Brümmer et al. (2012)Floors et al. (2014)Gryning et al. (2016)Kalthoff and Vogel (1992)Wenzel et al. (1997)Barthlott et al. (2003)Bowen et al. (2000)Rishel et al. (2003)Genthon et al. (2010, 2013)Vignon et al. (2017a, b)Beeken et al. (2008)Fischer et al. (2012)Dörenkämper et al. (2015)Fischer et al. (2012)The landbased stations can be further clustered into different subsets. Both the Cabauw and Hamburg towers lie in flat, humid, grassland areas, although the Hamburg tower is affected by the large metropolitan area of Hamburg. The Karlsruhe tower is located in the Rhine Valley, a rather hilly, forested area. The American sites, Boulder and Los Alamos, are located in relatively arid settings and are strongly affected by the surrounding topography of the Rocky Mountains.
The DomeC observatory, the single glacialbased station, is located in the interior of Antarctica and is influenced by completely different surface conditions, including high albedo and low roughness length.
The seabased stations are the offshore research platforms Forschungsplattform in Nord und Ostsee (FINO), located in the German North and Baltic seas. These sites are characterized by relatively homogeneous local surroundings and a large surface heat capacity. At the FINO towers nights with statically unstable conditions (defined as nights with two or more unstable datapoints in a night) are excluded as under these conditions wind speed measurements are unreliable (Westerhellweg and Neumann, 2012). Furthermore, at FINO1 nights with primary wind directions between 280 and 340^{∘} are excluded due to mast interference effects in the data. At the other stations such an exclusion is not necessary as three wind measurements with 120^{∘} separation are taken at each level.
We now present a brief overview of the HMM analysis with application to the SBL (Monahan et al., 2015, AM19a). An indepth description of HMM analyses can be found in Rabiner (1989).
We use the HMM to systematically characterize regime behaviour in the SBL from observed data. The HMM assumes that underlying the observations is an unobserved, or hidden, discrete Markov chain ($\mathbf{X}=\mathit{\{}{x}_{\mathrm{1}},{x}_{\mathrm{2}},\mathrm{\dots},{x}_{T}\mathit{\}}$). The analysis estimates the regimedependent parametric probability density distribution (pdf) of the observations (described by the parameter set λ), the transition probability matrix Q, and a most likely regime path of the Markov chain (known as the Viterbi path, VP). We associate the different states of the Markov chain with the SBL regimes (wSBL and vSBL). In our analysis we use observations of the threedimensional vector consisting of the Reynoldsaveraged vertically averaged mean wind speed, wind speed shear, and stratification to define the HMM input vector Y. A detailed justification of this observational input data set is presented in AM19a. The HMM estimation algorithm makes use of the following assumptions.

Markov assumption: the current regime value i_{t} at x_{t} depends exclusively on the previous regime of x_{t−1}, so
$$\begin{array}{}\text{(1)}& \begin{array}{rl}& P({x}_{t}={i}_{t}{x}_{t\mathrm{1}}={i}_{t\mathrm{1}},{x}_{t\mathrm{2}}={i}_{t\mathrm{2}},\mathrm{\dots},{x}_{\mathrm{0}}={i}_{\mathrm{0}})\\ & ={\mathbf{Q}}_{{i}_{t}{i}_{t\mathrm{1}}}\forall t\phantom{\rule{0.25em}{0ex}}\phantom{\rule{0.25em}{0ex}}\mathrm{with}\phantom{\rule{0.25em}{0ex}}\phantom{\rule{0.25em}{0ex}}i\in \mathit{\{}\mathrm{0},\mathrm{1}\mathit{\}},\end{array}\end{array}$$where the dynamics of the SBL are governed by Q (a 2×2 matrix corresponding to the wSBL and vSBL, respectively) such that ${\sum}_{{i}_{t}}{\mathbf{Q}}_{{i}_{t}{i}_{t\mathrm{1}}}=\mathrm{1}$.

Independence assumption: conditioned on X, values of Y are independent and identically distributed variables resulting in a probability of the observational data sequence of
$$\begin{array}{}\text{(2)}& \begin{array}{rl}& P(\mathbf{Y},\mathbf{X}\mathrm{\Lambda})={\mathit{\pi}}_{i}p({\mathbf{y}}_{\mathrm{0}}{x}_{\mathrm{0}}={i}_{\mathrm{0}},{\mathit{\lambda}}_{{i}_{\mathrm{0}}})\prod _{t=\mathrm{1}}^{T}{\mathbf{Q}}_{{i}_{t}{i}_{t\mathrm{1}}},\\ & p\left({\mathbf{y}}_{t}\right{x}_{t}={i}_{t},{\mathit{\lambda}}_{{i}_{t}})\phantom{\rule{0.25em}{0ex}}\phantom{\rule{0.25em}{0ex}}\mathrm{with}\phantom{\rule{0.25em}{0ex}}\phantom{\rule{0.25em}{0ex}}i\in \mathit{\{}\mathrm{0},\mathrm{1}\mathit{\}},\end{array}\end{array}$$where $\mathrm{\Lambda}={\left\{{\mathit{\lambda}}_{i},{\mathit{\pi}}_{i},\mathbf{Q}\right\}}_{i\in \mathit{\{}\mathrm{0},\mathrm{1}\mathit{\}}}$ is the full set of parameters of the HMM, for which ${\left\{{\mathit{\lambda}}_{i}\right\}}_{i\in \mathit{\{}\mathrm{0},\mathrm{1}\mathit{\}}}$ is the parameter set describing the regimedependent pdfs of y_{t} (taken to be Gaussian mixture models as in AM19a), and π_{i} is the probability that x_{0} is in regime i (wSBL or vSBL).

Stationarity assumption: this analysis assumes that Q and $\mathit{\{}{\mathit{\lambda}}_{i}{\mathit{\}}}_{i\in \mathit{\{}\mathrm{0},\mathrm{1}\mathit{\}}}$ are timeindependent.
The goal of the HMM analysis is to estimate Λ from Y. Starting from the probability of the observational time series conditioned on the parameters P(YΛ) and applying Bayes' theorem to obtain P(ΛY), the problem reduces to a maximumlikelihood estimation which can be iteratively solved to find local maxima via the expectation maximization algorithm (Dempster et al., 1979). Having estimated Λ, the most likely regime sequence (the VP) can be calculated. Regime occupation and transition statistics can then be obtained through analysis of the VP. The estimation of the parameters in the expectationmaximization scheme for our analysis is described in detail in Rabiner (1989).
One limitation of the HMM model considered is that it assumes stationary statistics. However, nonstationarities linked to the diurnal cycle and seasonal variability are present in the regime statistics of the SBL (cf. next section, AM19b). Generalizations exist which can account for nonstationarities, such as nonhomogeneous HMMs (Hughes et al., 1999; Fu et al., 2013) which condition transition probabilities on the state of external variables. Other clustering techniques such as the finiteelement variational approaches also relax the stationarity assumptions (e.g. Franzke et al., 2009; Horenko, 2010; O'Kane et al., 2013). In particular, the finiteelement, boundedvariation, vector autoregressive factor method (FEMBVVARX) includes both autoregressive dynamics within each regime and a modulation of regime dynamics to external drivers. For instance, Vercauteren and Klein (2015) were able to use this model to identify different regimes of interaction between submesoscale motions and the turbulence. However, as our analyses find no clear relationship between external drivers (geostrophic wind and cloud cover) and transitions between regimes of Reynoldsaveraged variables (AM19b), we consider stationary HMM analysis in this study in order to investigate the simplest possible approach to a stochastic parameterization of turbulence under SBL conditions. Using such a relatively simple parameterization allows us to determine where additional complexity is warranted and assess how well the dynamics are approximated by stationary Markovian systems.
To be useful as the basis of new parameterizations of turbulent fluxes in the SBL, FSMCs should model SBL regime statistics accurately. The statistics we focus on are the event durations and the probabilities of each of the occurrence of very persistent nights, of the occurrence of at least one transition within a night, and of multiple transitions within a night. Our reference FSMC models use transition matrices Q_{ref} obtained from HMM analyses in AM19a (Table 1). In the HMM analysis, the matrix Q can be held fixed at prescribed values while other parameters and the VP are estimated. Repeating HMM analyses using such fixed Q perturbed from Q_{ref}, we investigate the sensitivity of the regime statistics of corresponding VPs relative to their reference VP_{ref}. Because the estimated VP is constrained by the observations, its statistics may differ considerably from a FSMC using the same Q. Evaluating the FSMC regime statistics for a range of different Q determines the ranges of persistence probabilities for which SBL regime statistics of a FSMC match those of VP_{ref}. Mathematical expressions used to compute the regime statistics of a FSMC using a given Q are presented in Appendix A. These calculations require specification of the lengths of the nights. As the tower sites are located in the midlatitudes, we use a range of nighttime durations between 8 and 15 h. In this section we do not consider the glacialbased station, DomeC in Antarctica. Because the duration of the polar nights is much longer than nights at the other midlatitude stations considered, direct comparisons of regime occupation statistics within individual nights are not meaningful.
4.1 Comparison of VP_{ref} and FSMC statistics
For a FSMC (using Q_{ref} in Eqs. A1 and A2), the frequency of the occurrence of very persistent wSBL nights decreases monotonically with the length of the night (Fig. 1). Occurrence probabilities of very persistent wSBL nights from the FSMC match those of VP_{ref} in summertime (nights of duration 8 to 10 h), but are otherwise underestimated. For longer nights the FSMC underestimates their occurrence. The increase in occurrence probability with increasing night length in VP_{ref} is consistent with larger synopticscale variability and stronger mechanical generation of turbulence in winter, but is not accounted for in a FSMC. The occurrence probabilities of very persistent vSBL nights decrease with increasing length of night in VP_{ref}, consistent with an increase in mean pressure gradient force. While the FSMC also shows an increase, it systematically underestimates the observed occurrence of very persistent vSBL nights.
In VP_{ref} the probability of at least one wSBL to vSBL or vSBL to wSBL transition occurring within a night shows no systematic dependence on the length of the night across the tower sites (Fig. 2). In contrast, the occurrence probability of at least one transition in a FSMC (Eqs. A3 and A4) increases with the length of the night and is larger than the VP_{ref} at all sites (Fig. 2, lower panels). The overestimation of turbulence recovery events by the FSMC is slightly larger than that of turbulence collapse events at landbased stations, while the opposite is true at seabased stations.
The probabilities of the occurrence of a recovery event subsequent to a turbulence collapse in the FSMC (Eqs. A6 and A8, Fig. 3) agree better with those of VP_{ref} than do the probabilities of the overall occurrence of at least one wSBL to vSBL transition (Fig. 2). Both VP_{ref} and FSMC occurrence probabilities increase with the length of the night, at about the same rate. At landbased stations the VP_{ref} has fewer subsequent turbulence recovery events than expected from a FSMC, and at seabased sites more are observed than predicted by a FSMC. Distributions of wSBL to vSBL transitions subsequent to recovery events in a FSMC and the VP_{ref} are generally similar, with slightly better agreement in summer than winter (Fig. 3, right panels).
The occurrence of subsequent transition events is related to event durations in the vSBL and wSBL. For both types of events, the duration pdfs display clear maxima between 1 and 2 h after preceding transitions, demonstrating that the occurrence of subsequent transitions most often occurs after some recovery period (Fig. 4). No tworegime FSMC can account for these recovery periods because event duration pdfs in the FSMC always decay monotonically (Eqs. A5 and A7). After the initial recovery period, however, event duration pdfs are generally close in the VP_{ref} and FSMC (for a 12 h night duration), resulting in a generally good agreement of mean event durations. The qualitative shape of the event duration pdfs is insensitive to season, although during winter the probabilities of longer events increase (longer nights allow more time for longer events to occur). Consistently, different nighttime durations in the FSMC change the pdf decay rate (steeper and shallower for, respectively, shorter and longer nights); however, the substantial differences to pdfs estimated from VP_{ref} remain.
The results above demonstrate the existence of at least two aspects of the regime statistics which qualitatively cannot be accounted for by a tworegime FSMC: nonstationary and nonMarkov behaviour. While many other regime statistics follow qualitatively the behaviour of a FSMC, quantitative differences between the statistics of VP_{ref} and FSMCs using Q_{ref} are substantial. As values on the diagonal of Q_{ref} are close to one (Table 1), the theoretical regime statistics calculated from the FSMC are highly sensitive to these values (cf. Eqs. A1–A8). Therefore, we now investigate the sensitivity of VP to perturbed Q to determine whether biases in the SBL regime statistics of the FSMC can be reduced by modest changes in Q.
4.2 Sensitivity of the VP to perturbed persistence probabilities
We consider the sensitivity of the VPs to changes in the persistence probabilities (diagonal elements of ${\mathbf{Q}}_{{i}_{t}{i}_{t\mathrm{1}}}=P({i}_{t\mathrm{1}}\to {i}_{t})$ with ${i}_{t}={i}_{t\mathrm{1}}$ and i∈{wSBL,vSBL}) by perturbing Q from the reference value, holding it fixed, and repeating the HMM analysis. In order to assess whether the perturbed VPs are consistent with VP_{ref}, we consider first the occupation consistency between the two (the fraction of time in which both VPs are in the same regime). As in AM19a, we then assess the consistency of the timing of transitions (simultaneity of transitions in the reference and perturbed VPs) as well as the representation of very persistent nights. These various metrics are then combined to obtain the total VP consistency. For this part of the analysis, we focus on the Cabauw tower data as we have analyzed these data extensively in AM19a. The same qualitative results are found using all the tower station data we have considered (not shown).
The estimated VP is robust to substantial changes in Q, with an occupation consistency of more than 90 % obtained for ranges of wSBL and vSBL persistence probabilities between 0.5 and about 0.9999 (Fig. 5). Agreement at the 99 % level is found for persistence probabilities between approximately 0.9 and 0.9999. Accurate representation of the timing of transitions is found for both a broad range of low persistence probabilities and for a small range of persistence probabilities between 0.96 and 0.99. The fact that the accuracy of the transitions is above 99 % if both persistence probabilities are below 0.5 (regime transitions in a single step are more probable than remaining in the regime) is a consequence of the high frequency of modelled transitions improving the ability to capture individual transitions in VP_{ref} (at the expense of modelling far too many transition events). Because regime transitions are relatively rare, the physically meaningful range of persistence probabilities corresponds to relatively large values of both. The accuracy of the occurrence of very persistent wSBL nights in the perturbed VP is best for high P(wSBL→wSBL) and is weakly sensitive to P(vSBL→vSBL). This result is not surprising as the high wSBL persistence probability ensures that the majority of very persistent wSBL nights as estimated by VP_{ref} are captured. This measure is unaffected by any underestimate of the occurrence of very persistent vSBL nights. Complementary results are found for the occurrence of very persistent vSBL nights.
Each of the five consistency measures discussed captures distinct aspects of agreement between the reference and perturbed VPs. We define total consistency relative to VP_{ref} as each of the five described VP consistencies exceeding a specific threshold. At Cabauw, a 99 % total consistency can be achieved for P(wSBL→wSBL) between approximately 0.97 and 0.99 and P(vSBL→vSBL) between 0.98 and 0.99 (Fig. 5f). If only a 95 % total VP consistency is required, P(wSBL→wSBL) and P(vSBL→vSBL) can range approximately between 0.95 and almost 1.
The sensitivity analysis of the estimated regime occupation sequence to changes in Q values reveals that reasonably accurate HMM regime statistics can be obtained over a relatively large range of persistence probabilities. We now return to FSMC calculations using the ranges of Q where the total VP consistency exceeds 95 % to assess whether a common range of persistence probabilities exists where statistics of VP_{ref} and FSMC are consistent.
4.3 Sensitivity of SBL regime statistics to changing persistence probabilities in a FSMC
As discussed above, calculations of the theoretical values of SBL regime statistics from a FSMC require one to specify the duration of the night. To compare statistics from VP_{ref} and FSMC, we define three night durations representative of individual seasons (Table 2). The statistics from VP_{ref} for the individual towers and seasons are listed in Table 3. To account for sampling uncertainty in the SBL regime statistics as estimated from VP_{ref}, we consider occurrence probabilities in a 10 % error range (±5 %) around the values from VP_{ref}.
Similar to what was found at Cabauw, across all landbased stations the perturbed VP is not very sensitive to the values of Q, and a relatively broad range of persistence probabilities allows for a 95 % total VP consistency in the HMM analyses (Fig. 6; grey isolines). The persistence probabilities corresponding to the most likely VPs are reasonably similar across the different stations. In Fig. 6 the solid, dashed, and dotted lines correspond, respectively, to persistence probabilities resulting in FSMC probabilities of at least one transition in a night equal to 5 % below and 5 % above the VP_{ref} values (wSBL to vSBL in red; vSBL to wSBL in black). The range of persistence probabilities for which the FSMC produces occurrence probabilities of very persistent nights within a 10 % uncertainty band around that of VP_{ref} is displayed by a red shaded rectangle with a mark for the exact VP_{ref} statistics.
Despite accounting for nonstationarity by considering nights of different lengths separately, in general no ranges of persistence probabilities in any season can be identified for which FSMCs are able to model all SBL regime statistics within our imposed uncertainty range. Only at Cabauw in wintertime and Hamburg in spring or autumn does such a range of persistence probabilities exist.
In order to model only a subset of SBL regime statistics (such as the occurrence of SBL regime transitions or very persistent nights) accurately in a FSMC, the required persistence probability values generally fall outside the region of high total VP consistency between the reference and perturbed VPs. This fact is true for all seasons.
At seabased stations the range of persistence probabilities that ensures good agreement between the VP_{ref} and the perturbed VPs is substantially larger than for landbased stations (not shown). The total VP consistency exceeds 95 % for regime persistence probabilities ranging from approximately 0.92 to 0.99. Nonetheless, similar to landbased stations, no persistence probability range can be identified, which allows a FSMC to simulate all SBL regime statistics accurately. Again, to obtain only specific SBL regime statistics, ranges of persistence probabilities are required which generally exceed the values ensuring good agreement between the reference and perturbed VPs.
The fact that a FSMC is not able to account for all regime statistics (with or without seasonally varying Q) motivates the consideration of other approaches to the parameterization of regime dynamics. In particular, the use of statedependent transition probabilities is supported by the relatively wellunderstood control of the internal SBL dynamics on wSBL to vSBL transitions (e.g. Acevedo et al., 2019; Maroneze et al., 2019, AM19b, AM19c), including the role of surface energy coupling (van de Wiel et al., 2017; Holdsworth and Monahan, 2019). In the next section we present a prototype of such a parameterization.
In this section, we develop a prototype explicitly stochastic parameterization for numerical weather prediction and climate models and test it using an idealized SCM. We first consider the state dependence of transition probabilities from VP_{ref}, to be used as the basis of a twovalue (wSBL or vSBL) discrete SBL regime occupation variable (S). After having estimated functional forms for these conditional probabilities from fits to data, a parameterization of episodic enhancement of eddy diffusivity by intermittent turbulence bursts is developed. Finally, the application of this parameterization in the SCM is presented. We emphasize the fact that the explicitly stochastic parameterization and the tests of it presented here are intended to be a proof of concept. A formal validation of model experiments against observational data, including systematic sensitivity analyses of the free parameters and an implementation in a more complex singlecolumn model, will be the subject of a future study.
5.1 Statedependent transition probabilities
The Richardson number (Ri) is often used in parameterizations of stratified boundary layer turbulence, and as such is a natural candidate on which to condition probabilities of transitions between states of S. For instance, we expect physically that $P(\mathrm{wSBL}\to \mathrm{vSBL}Ri)$ should be small for small Ri but should increase to virtual certainty for sufficiently large Ri.
Due to their coarse vertical sampling, the Reynoldsaveraged observational tower data considered only allow for a characterization of finitedifferenced approximations to Ri, in particular the bulk Richardson number (Ri_{B}):
where g is the acceleration due to gravity, $\stackrel{\mathrm{\u203e}}{\mathrm{\Theta}}$ the mean background potential temperature, h the height of the upper measurement and s the lower measurement height near the surface, and Θ and W, respectively, the potential temperature and wind speed (at heights indicated by subscripts).
To assess the relationship between Ri_{B} and transition probabilities (and in particular the robustness of this relationship across different locations) we first investigate composites of its evolution during regime transitions at the various tower sites described in Sect. 2. These composites, centred on the time of transitions and extending 90 min before and after, characterize the average behaviour of Ri_{B} across transitions. Such composites do not distinguish differences between individual events which may be important for a detailed physical understanding of a specific transition. Furthermore, composite changes may be less sharp than individual ones, due to variations in transition timing below the averaging scale of the data considered.
Across all land and glacialbased stations Ri_{B} measured between each observational height and the surface systematically increases (decreases) during turbulence collapse (recovery) events (Fig. 7, columns one and three). At seabased sites changes in Ri_{B} are not evident. The weak signal in Ri_{B} at seabased stations is likely related to the fact that the lowest observational levels are much farther from the surface than at other stations (30 m above mean sea level).
In order to further compare results across all tower sites, we concentrate on Ri_{B} between about 100 and 10 m (Ri_{B}(100,10)) for landbased stations. Because of the very shallow inversion at this location, at DomeC we use Ri_{B} between 4 and 1 m (cf. AM19c). The distributions of Ri_{B}(100,10) show that not only do the mean and median show a systematic behaviour across regime transitions, but so too does the interquartile range (Fig. 7, columns two and four). Consistent with previous results the distributions at seabased stations do not change across transitions.
The P(wSBL → vSBLRi_{B}) estimated from using the VP_{ref} (binned by Ri_{B} increments of 0.02) shows low transition probabilities across all tower sites (well below 0.01) for Ri_{B} smaller than about 0.1 (Fig. 8, upper left panel). For Ri_{B} larger than 0.1, P(wSBL → vSBLRi_{B}) increases linearly at the landbased and glacialbased stations to Ri_{B}≃0.6, beyond which wSBL conditions are unsustainable. Consistent with the composites in Fig. 7, P(wSBL → vSBLRi_{B}) at seabased stations is independent of Ri_{B}.
At landbased stations, P(vSBL → wSBLRi_{B}) demonstrates that vSBL conditions below Ri_{B} 0.1 are unsustainable (Fig. 8, upper right panel). Above Ri_{B}≃0.1 values of P(vSBL → wSBLRi_{B}) do not approach zero and are approximately independent of Ri_{B}. However, P(vSBL → wSBLRi_{B}) exhibits considerable variability with no systematic behaviour evident across stations. If implemented into a parameterization, the approximately stateindependent P(vSBL → wSBLRi_{B}) would result in turbulence recovery transition statistics decoupled from the flow or stratification profiles. As such, it could not account for the recovery time evident in the observed event duration pdfs. This fact, along with the fact that conditional dependence of wSBL to vSBL transitions is entirely different over land than it is over the ocean, suggests that conditioning the transition probabilities on Ri_{B} is not appropriate.
As an alternative to conditioning on Ri_{B}, we now consider conditioning transition probabilities on stratification. At all sites except DomeC, we represent the stratification by Θ_{100}−Θ_{s}. Due to the very shallow boundary layers at DomeC, potential temperature differences between about 4 m and the surface (which demonstrate comparable stratification value changes during transitions) are considered. Although the stratification alone does not describe the full dynamical stability of the flow, it is among the state variables which display the largest changes across regime transitions (cf. van de Wiel et al., 2017, and AM19c). Moreover, HMM analyses of the stratification alone have been shown to accurately capture the VP_{ref} (cf. AM19a). Across the 90 min before and after transitions, not only do the composites of stratification demonstrate clear changes (cf. AM19c), but the entire probability distribution also shifts (Fig. 9).
The derived transition probabilities conditioned on Θ_{100}−Θ_{s} as estimated from VP_{ref} (binned by increments of 0.2 K) demonstrate qualitatively similar behaviour at all the stations (Fig. 8, second row). In contrast to conditioning on Ri_{B}, conditioning transition probabilities on stratification does not show marked differences between land and seabased stations. The $P(\mathrm{wSBL}\to \mathrm{vSBL}{\mathrm{\Theta}}_{\mathrm{100}}{\mathrm{\Theta}}_{\mathrm{s}})$ demonstrates an almost linear increase with increasing stability across all the tower sites. The turbulence recovery transition, on the other hand, shows very low $P(\mathrm{vSBL}\to \mathrm{wSBL}{\mathrm{\Theta}}_{\mathrm{100}}{\mathrm{\Theta}}_{\mathrm{s}})$ above about 2–3 K but increases rapidly for weaker inversion strengths. To build a statedependent parameterization for S conditioned on stratification, conditional transition probabilities discussed above are fit to functional forms. As the wSBL cannot be sustained for strong inversions or a vSBL for weak inversions (Fig. 8, second row), transition probabilities for such conditions are set to 1. The functional forms for the stratificationdependent transition probabilities are
and
The bestfit parameter and the RMSE for each station are listed in Table 4; the corresponding bestfit functions are shown in Fig. 8 (second row). Those fits are similar enough to each other to motivate analysis of the mean behaviour across all data, yielding parameter sets as listed in Table 4 and corresponding functions as depicted in Fig. 8 (third row, solid black line). Using the median parameter set or a best fit through all the data does not change the parameterization substantially.
5.2 Stochastic forcing in the vSBL regime
As described in the Introduction, stateoftheart planetary boundary layer turbulence parameterizations are able to produce radiatively driven turbulence collapse. In contrast, mechanisms to explicitly generate the turbulence recovery are too weak or lacking in standard parameterizations. He et al. (2012) showed that a stochastic process representing the effects of intermittent turbulence events can be implemented as an extra source term in the prognostic TKE budget during vSBL conditions, such that these events episodically drive the vSBL into a turbulence active regime. In their approach, however, the generation of intermittent turbulence bursts did not depend on the state of the boundary layer. Here, we propose to introduce a new local variable, the twovalue discrete SBL regime occupation variable S, tracking SBL regimes. At each time step the occurrence of a regime transition is determined randomly using the instantaneous statedependent transition probabilities derived above. When S is in the vSBL, additional stochastic forcing is added as a representation of the effect of intermittent turbulence bursts. These enhancements occur with random sizes and at random times and are similar to a compound Poisson process. This approach is designed to be able to reproduce the recovery time in the vSBL event duration distribution.
Many models, including the one we consider, represent turbulence fluxes using firstorder closure. Here, we represent additional stochastic forcing in the vSBL by increasing the diffusivities of heat and momentum:
where K is the diffusivity for momentum and heat, K_{SMC} is the diffusivity as determined by the standard SCM parameterization (cf. Eq. B7), and SF_{k} represents the effects of the kth intermittent turbulence pulse parameterized as follows.

At each time step the probability of the occurrence of an intermittent turbulence pulse is given by λ_{SF} dt, where λ_{SF} is its occurrence rate and dt the model time step. If a turbulence pulse is determined to occur at time t_{k}, a random number r is drawn from a uniform distribution on [0,R] representing the maximum strength of the burst SF_{k}, occurring at time ${t}_{{w}_{k}}={t}_{k}+{\mathit{\tau}}_{w}$.

The evolution of SF_{k} is split into growth and decay phases. The relatively short growth phase is introduced to avoid numerical instabilities, while the decay phase represents the dissipation of the intermittent turbulence pulse. Each SF_{k} is assumed to have a Gaussian profile in the vertical (which is intended to represent the localization of the enhanced mixing in the region where the turbulence pulse occurs) given by
$$\begin{array}{}\text{(7)}& {\mathrm{SF}}_{k}(t,z)={s}_{k}\left(t\right)\mathrm{exp}\left({\displaystyle \frac{(z{h}_{k}(t){)}^{\mathrm{2}}}{\mathrm{2}{\mathit{\sigma}}_{k}^{\mathrm{2}}\left(t\right)}}\right).\end{array}$$ 
The strength s_{k}(t) increases from t_{k} until ${t}_{{w}_{k}}$ according to a hyperbolic tangent function. Afterwards an exponential decay is prescribed with an eddy overturning timescale τ_{e}:
$$\begin{array}{}\text{(8)}& \begin{array}{rl}& {s}_{k}\left(t\right)=\\ & \left\{\begin{array}{rll}\mathrm{0}& \mathrm{for}& t{t}_{k}\\ \mathrm{0.505}\phantom{\rule{0.25em}{0ex}}r\phantom{\rule{0.33em}{0ex}}\mathrm{tanh}\left(\frac{t\mathrm{0.5}\phantom{\rule{0.25em}{0ex}}{\mathit{\tau}}_{w}{t}_{{w}_{k}}}{\mathrm{0.5}\phantom{\rule{0.25em}{0ex}}{\mathit{\tau}}_{w}}\right)& & \\ \left(\right)close=")">{\mathrm{tanh}}^{\mathrm{1}}\left(\frac{\mathrm{99}}{\mathrm{101}}\right)+\mathrm{0.505}\phantom{\rule{0.25em}{0ex}}r\\ \mathrm{for}& {t}_{k}\le t{t}_{{w}_{k}}\end{array},r\phantom{\rule{0.25em}{0ex}}\mathrm{exp}\left(\frac{t{t}_{{w}_{k}}}{{\mathit{\tau}}_{\mathrm{e}}}\right)& \mathrm{for}& t\ge {t}_{{w}_{k}}\right).\end{array}\end{array}$$ 
We assume the centre of the turbulence pulse, h_{k}(t), to be initiated aloft (cf. AM19c, Fig. 4) and to move exponentially towards the surface during the decay phase:
$$\begin{array}{}\text{(9)}& \begin{array}{rl}& {h}_{k}\left(t\right)=\\ & \left\{\begin{array}{rll}{h}_{\mathrm{b}}& \mathrm{for}& t{t}_{{w}_{k}}\\ ({h}_{\mathrm{b}}{h}_{\mathrm{e}})\mathrm{exp}\left(\frac{t{t}_{{w}_{k}}}{{\mathit{\tau}}_{h}}\right)+{h}_{\mathrm{e}}& \mathrm{for}& t\ge {t}_{{w}_{k}}\end{array}\right),\end{array}\end{array}$$where h_{b} and h_{e} denote the heights of the centre of SF_{k}(t,z) at the beginning and end of the turbulence pulse, respectively, and τ_{h} is the vertical migration timescale.

The width of SF_{k}(t,z), σ_{k}(t), is assumed to increase from the onset of the pulse until ${t}_{{w}_{k}}$ according to a hyperbolic tangent function which is introduced to avoid numerical instabilities as for s_{k}(t). The functional form ensures σ_{k}(t) increases in a similar way to s_{k}(t). During its decay σ_{k}(t) widens exponentially (representing the interaction of the turbulent patch with its surroundings) with a typical broadening timescale τ_{σ}:
$$\begin{array}{}\text{(10)}& \begin{array}{rl}& {\mathit{\sigma}}_{k}\left(t\right)=\\ & \left(\right)open="\{">\begin{array}{r}\frac{{\mathit{\sigma}}_{\mathrm{w}}+\mathrm{1}}{\mathrm{2}}\mathrm{tanh}\left(\right)open="(">\frac{t\mathrm{0.5}\phantom{\rule{0.25em}{0ex}}{\mathit{\tau}}_{w}{t}_{{w}_{k}}}{\mathrm{0.5}\phantom{\rule{0.25em}{0ex}}{\mathit{\tau}}_{w}}\\ & \end{array}\left({\mathrm{tanh}}^{\mathrm{1}}\left(\frac{{\mathit{\sigma}}_{\mathrm{w}}\mathrm{1}}{{\mathit{\sigma}}_{\mathrm{w}}+\mathrm{1}}\right)\right)+\frac{{\mathit{\sigma}}_{\mathrm{w}}+\mathrm{1}}{\mathrm{2}}& \mathrm{for}& t{t}_{{w}_{k}}\\ ({\mathit{\sigma}}_{\mathrm{w}}{\mathit{\sigma}}_{\mathrm{e}})\mathrm{exp}\left(\frac{t{t}_{{w}_{k}}}{{\mathit{\tau}}_{\mathit{\sigma}}}\right)+{\mathit{\sigma}}_{\mathrm{e}}& \mathrm{for}& t\ge {t}_{{w}_{k}}& ,\end{array}\end{array}$$where σ_{w} and σ_{e} are the widths of the turbulence pulse at, respectively, the time of its maximal strength and end of its lifecycle.
As indicated by Eq. (6), the effects of multiple overlapping turbulence bursts are taken to be additive. Thus, we assume no interaction between successive turbulence bursts. Below we test the parameterization in an idealized SCM. The values for the parameters in the stochastic forcing parameterization as used in the SCM experiments are listed in Table 5.
5.3 SCM experiments with explicitly stochastic parameterization
The SCM we use to test the parameterization is described in van Hooijdonk et al. (2017) and Holdsworth and Monahan (2019). The governing equations of the SCM are presented in detail in Appendix B. In this study we consider the upper boundary of the model, at which we impose the boundary condition that the flow is geostrophic with a speed of 6 m s^{−1}, to be fixed at 5000 m. The lower boundary of the model domain is determined by the momentum roughness length which is set at z_{0}=0.001 m over a dry sand surface with density ρ_{s}=1600 kg m^{−3}, specific heat capacity c_{s}=800 J kg^{−1} K^{−1}, and thermal conductivity λ_{s}=0.3 W m^{−1} K^{−1}. Furthermore, we assume clearsky conditions.
The explicitly stochastic parameterization described above results in SBL transitions that are qualitatively in agreement with observations. An example realization is presented in Fig. 10. In this realization radiative cooling leads initially to a steady increase in stratification and flow stability. Once the vSBL is established (around simulation hour 2) turbulence pulses occur (none of which are individually sufficient to initiate a vSBL to wSBL transition). These turbulence pulses result in heat fluxes slightly larger than observed but of the right order of magnitude (e.g. Doran, 2004). The occurrence of multiple smaller turbulence pulses between simulation hours 6 and 7.5 slowly erodes the stratification until it is sufficiently weakened that a vSBL to wSBL transition occurs. Consistent with observations, the simulated vSBL to wSBL transition lags behind the occurrence of the last turbulence burst (AM19c). After the wSBL is established (about simulation hour 7.5) the stratification begins to increase again and a subsequent turbulence collapse occurs approximately 1.5 h later. This event duration is very close to the peak in the pdf of the wSBL event duration (cf. Fig. 4), providing further evidence that these recovery periods in the wSBL are related to internal dynamics.
Structures of wind and temperature profiles during vSBL to wSBL transitions resemble those of observations (cf. AM19c). Turbulence pulses lead to warming in the lowest 40 m of the boundary layer as turbulent sensible heat fluxes transport warm air from layers between 50 and 150 m towards the surface (Fig. 10d–f). Enhanced vertical momentum transport results in the nearsurface winds first increasing and then decreasing (as a result of enhanced momentum flux into the surface; Fig. 10g–i). The relative magnitudes of the initial wind speed increase and subsequent decrease are sensitive to the height and width of SF_{k} (not shown). As the turbulence pulses decrease the stratification, boundary layer heights increase. These results demonstrate that an explicitly stochastic model with statedependent transition probabilities and a representation of intermittent turbulence pulses in the vSBL can produce regime transitions that are in qualitative agreement with observations.
Recent studies have demonstrated that hidden Markov model (HMM) analysis is an effective tool to classify the nocturnal boundary layer (SBL) into weakly stable (wSBL) and very stable (vSBL) conditions (Monahan et al., 2015, AM19a, AM19b, AM19c). One goal of this study is to investigate whether a tworegime “freely running” stationary Markov chain (FSMC, obtained from the HMM analysis) is able to simulate SBL regime statistics with sufficient accuracy to be the foundation of a stochastic parameterization of SBL regimes. We have assessed the performance of the FSMC (using the most likely transition probabilities from HMM analyses) relative to the observed regime statistics such as the distributions of event durations and the probabilities of occurrence of very persistent nights (nights without SBL regime transitions), of any regime transitions, and of multiple subsequent transitions.
The nonstationary occurrence probabilities of very persistent nights as estimated from the HMM analyses cannot be accounted for in a FSMC. The occurrence of regime transitions is slightly overestimated by the FSMC. Transitions subsequent to preceding ones and the mean event durations in each regime are relatively close to the statistics as estimated with the HMM across all sites and seasons. The recovery time between regime transitions, however, is not explainable by any tworegime FSMC.
By fixing the persistence probability matrix and producing new perturbed HMM regime sequences we have quantified the range of persistence probabilities that are consistent with the most likely HMM regime sequence. At all the sites considered, we find that the HMM regime sequence varies only slightly for reasonable variations of transition probabilities.
Generally, no persistence probability range can be identified for which all SBL regime statistics of a FSMC are consistent with those of the HMM analysis. This result is true even when seasonal nonstationarity is accounted for. The nonMarkov behaviour of regime occupation and the fact that aspects of regime transitions such as radiatively driven turbulence collapse can be simulated by models indicate the need for statedependent transition probabilities in any explicitly stochastic representation of SBL regime transitions.
With the exception of the seabased stations, statedependent transition probabilities conditioned on the bulk Richardson number (Ri_{B}) exhibit a systematic statedependent behaviour for wSBL to vSBL transitions. Transition probabilities for turbulence recovery events, on the other hand, demonstrate approximately stateindependent characteristics with little consistency across sites. The lack of robustness of the conditional transition probabilities and weak dependence of turbulence recovery on Ri_{B} imply that Ri_{B} is not an appropriate conditioning variable.
Statedependent transition probabilities conditioned on stratification, in contrast, demonstrate a systematic statedependent behaviour for both types of transitions across all stations. The wSBL to vSBL transition probabilities conditioned on the stratification increase almost linearly up to a threshold, while the vSBL to wSBL transition probabilities show a sigmoidal behaviour.
A prototype of an explicitly stochastic parameterization is developed based on the following foundations. The explicitly stochastic parameterization uses a new local variable S tracking the SBL regime (wSBL or vSBL). At each time step, the occurrence of a transition is determined randomly using the instantaneous statedependent transition probabilities. If S is determined to be in the vSBL, episodes of enhanced turbulent mixing are added.
Experiments in an idealized SCM confirm that such an approach provides a reasonable representation of SBL regime dynamics. VSBL to wSBL transitions are related to the occurrence of turbulence bursts, lagging these slightly. The simulated responses of temperatures and wind speeds due to the enhanced heat and momentum fluxes towards the surface are comparable to observations. For both transitions, simulated recovery times are consistent with the observed distributions.
Emphasizing the fact that the explicitly stochastic parameterization presented here is only intended to be a proof of concept, preliminary results suggest that the parameterization has the potential to simulate SBL regime dynamics in weather and climate models. The observational information on climatological regime statistics and event duration distributions (cf. AM19b, AM19c, and the present study) can be used to tune the parameterization to generate the appropriate SBL regime variability. Due to the fact that event duration distributions and stratificationdependent transition probabilities are similar between the midlatitude tower sites, we believe that the transition process at those stations can be parameterized independently of the local complexity of the surface conditions (such as surface type or topography). Although at DomeC similar stratificationdependent transition probabilities can be obtained, the altitude range used to determine stratification is different than at the other sites, suggesting that a generalized parameterization has to take additional local state variables into account. Furthermore, even though a systematic behaviour of transition probabilities conditioned on Ri_{B} across the different tower sites is absent, Ri_{B} is a coarse approximation to Ri. Analyses of other data sets (with higher spatial and temporal resolution) allowing for better approximations or an estimation of the gradient Ri or Ri flux are needed to determine whether a systematic behaviour is truly absent.
As our model analysis only considers fixed surface and upper boundary conditions, sensitivity analyses of these conditions in the idealized SCM as well as of different resolutions in both time and space must be assessed in terms of different observational case studies. Due to the fact that the firstorder closure requires us to consider the effects of intermittent turbulence events as an enhancement of diffusivities for momentum and heat, we have imposed a rather synthetic space–time structure of these enhancements. As intermittent turbulence events are associated with the local enhancement of turbulence kinetic energy (TKE), our parameterization of episodically occurring turbulence bursts can more naturally be implemented in a prognostic TKE scheme as an additional TKE source term (e.g. He et al., 2012, 2019). Such an approach would allow the model to determine the space–time structure of turbulence pulses as well as the interaction of turbulence bursts. In the future, we will implement the parameterization in a more complex SCM (with and without a prognostic TKE scheme) to obtain a more comprehensive assessment of its use in numerical weather prediction and climate models.
Finally, the parameterization requires further information regarding horizontal dependence of regime statistics, as it is not reasonable to expect an entire largescale weather or climate model grid box to always be in one or the other state. This horizontal dependence will be the subject of a future study. Assessment of the dependence length scales relative to the grid box size will allow the determination of the effects of spatial averaging to the grid box scale on the probability distribution of SBL quantities.
The observational data can be obtained from the persons and sources indicated in the acknowledgments. Data from the singlecolumn model can be obtained from https://doi.org/10.5683/SP2/ZUENCK (Abraham et al., 2019).
In this Appendix, we present the calculations of quantities based on “freely running” stationary Markov chains. Note that we introduce in the following equations the notation of $P({i}_{t\mathrm{1}}\to {i}_{t})$ instead of ${\mathbf{Q}}_{{i}_{t}{i}_{t\mathrm{1}}}$ (cf. Eq. 2) indicating the regime transition probabilities between two time steps. We replace the mathematical notation of $i\in \mathit{\{}\mathrm{0},\mathrm{1}\mathit{\}}$ for the regime occupation with the terms wSBL and vSBL in order to increase the readability.
A1 Calculation of very persistent regimes
The occurrence probability of very persistent SBL nights in a stationary Markov chain is calculated using the persistence probabilities of the Markov chain (i.e. P(wSBL→wSBL) and P(vSBL→vSBL)) as follows:
where π_{wSBL} and π_{vSBL} are, respectively, the initial climatological distributions of being in the wSBL or vSBL and n equals the length of the night in hours multiplied by 6 (for a data resolution of 10 min).
A2 Calculation of at least one particular SBL transition occurrence
The probability of the occurrence of a particular SBL transition in a night of duration n can be expressed in terms of the probability of the absence of any transitions and the probability of a single complementary transition. In the case of the wSBL to vSBL transition, the single complementary transitions are from the vSBL to the wSBL. Naturally, the reverse is true for vSBL to wSBL transitions. That way we account for all possibilities that definitely do not have a transition of the desired type.
The probability of the occurrence of turbulence collapse is
Equivalently, the probability of a turbulence recovery (vSBL to wSBL transition) is given by
A3 Calculation of the probability of subsequent turbulence recovery or collapse event occurrences
The probability that a turbulence recovery event will occur after a turbulence collapse in a night of duration n time steps is equal to the sum of the probabilities of all events that include the occurrence of SBL patterns starting at time t_{1} in the wSBL, and afterwards showing the sequence $\mathrm{wSBL}\to \stackrel{t\times}{\overbrace{\mathrm{vSBL}\to \mathrm{\dots}\to \mathrm{vSBL}}}\to \mathrm{wSBL}$ with no further subsequent recovery events; i.e. the SBL remains in the wSBL or has a maximum of one more collapse. The last part of this calculation assures that no double counting of sequences with length t occurs as the probability calculation of being in the wSBL at time t_{1} does not include information of the preceding path. The probability of a certain subsequent recovery pattern of length t can then be calculated as
where π is the vector of climatological initial probabilities. Calculating the overall probability that such a subsequent event will occur is then the summation over all possible t:
Equivalently, the probabilities of subsequent turbulence collapses after recovery events are
Calculating the overall probability that such a subsequent event will occur is then the summation over all possible t:
The idealized SCM is a model of pressuredriven flow in the dry SBL assuming horizontal homogeneity, described in detail in Holdsworth and Monahan (2019). The model equations follow those of Blackadar (1979):
where the three state variables U(z,t), V(z,t), and T(z,t) are the zonal velocity, meridional velocity, and potential temperature. The surface temperature T_{s} is determined by the sum of radiative fluxes, turbulent sensible heat fluxes, and surface heat fluxes as described in more detail below. The constant C_{HL}=2 K h^{−1} represents the atmospheric cooling due to net longwave radiative flux divergence and is set as a fixed constant for simplicity.
The geostrophic wind components are defined by
with the magnitude of the geostrophic wind speed given by ${S}_{\mathrm{g}}=({U}_{\mathrm{g}}^{\mathrm{2}}+{V}_{\mathrm{g}}^{\mathrm{2}}{)}^{\mathrm{0.5}}$.
The vertical heat flux $H=\mathit{\rho}{c}_{p}\stackrel{\mathrm{\u203e}}{{w}^{\prime}{T}^{\prime}}$ and shear stresses ${\mathit{\tau}}_{x}=\mathit{\rho}\stackrel{\mathrm{\u203e}}{{U}^{\prime}{w}^{\prime}}$ and ${\mathit{\tau}}_{y}=\mathit{\rho}\stackrel{\mathrm{\u203e}}{{V}^{\prime}{w}^{\prime}}$ (where w is the vertical velocity) are parameterized using firstorder closure ${\mathit{\tau}}_{x}/\mathit{\rho}={K}_{\mathrm{m}}{\partial}_{z}U$, ${\mathit{\tau}}_{y}/\mathit{\rho}={K}_{\mathrm{m}}{\partial}_{z}V$, and $H/\mathit{\rho}{c}_{p}={K}_{H}{\partial}_{z}T$, where K_{m} and K_{h} are the diffusivities for, respectively, momentum and heat. The diffusivities are taken to be the sum of molecular and turbulent contributions (Moene et al., 2010):
where the molecular contribution $\mathit{\nu}=\mathrm{1.5}\times {\mathrm{10}}^{\mathrm{5}}\phantom{\rule{0.125em}{0ex}}{\mathrm{m}}^{\mathrm{2}}\phantom{\rule{0.125em}{0ex}}{\mathrm{s}}^{\mathrm{1}}$ is the kinematic viscosity. The molecular Prandtl number is fixed at Pr=0.72 and $\mathit{\lambda}=\mathit{\nu}/Pr$ is the molecular diffusivity. The mixing length is given by
with κ the von Kármán constant, u_{*} friction velocity, C=26 (Van Driest, 1951), and ${\mathit{\lambda}}_{\mathrm{0}}=\mathrm{0.00027}{S}_{\mathrm{g}}/{f}_{\mathrm{0}}$ (Blackadar, 1962).
The stability functions f_{m,h}(Ri) depend on the Richardson number $Ri=\frac{g}{{T}_{\mathrm{REF}}}\frac{{\partial}_{z}T}{({\partial}_{z}U{)}^{\mathrm{2}}}$ and are related to the similarity functions from MOST ϕ_{m,h}(ζ) by
where $\mathit{\zeta}=z/L$ is the stability parameter and $L=\frac{{u}_{*}^{\mathrm{2}}}{\mathit{\kappa}\frac{g}{{T}_{\mathrm{s}}}\frac{{H}_{\mathrm{0}}}{{c}_{p}\mathit{\rho}}}$ is the Obukhov length. In our simulations, we use the Businger–Dyer formulation given by ${\mathit{\varphi}}_{\mathrm{m},\mathrm{h}}\left(\mathit{\zeta}\right)=\mathrm{1}+\mathit{\beta}\mathit{\zeta}$, where $\mathit{\beta}=\mathrm{1}/R{i}_{c}=\mathrm{5.2}$ (Businger, 1988).
At the upper boundary of the model we impose the boundary condition that the flow is geostrophic and a noflux condition so H=0 and τ=0. The lower boundary of the model domain is determined by the roughness length (assumed to be the same for momentum and energy) with noslip boundary conditions U(z_{0})=0 and $T({z}_{\mathrm{0}},t)={T}_{\mathrm{s}}\left(t\right)$.
The model implements the surface energy scheme of Blackadar (1976), known as the forcerestore method. The surface, represented as an infinitesimally thin layer with temperature T_{s}(t) at z=z_{0}, is forced by the net radiation and sensible heat flux and restored to the subsurface temperature through the subsurface energy fluxes. The damping depth of the diurnal forcing $d=(\mathrm{2}{\mathit{\lambda}}_{\mathrm{s}}/{C}_{\mathrm{s}}\mathit{\omega}{)}^{\mathrm{0.5}}$, where C_{s}=ρ_{s}c_{s} is the volumetric heat capacity, is associated with a sinusoidal diurnal forcing. The temperature at this depth is set as the subsurface temperature T_{d}=281 K. In Eq. (B4), ${C}_{\mathrm{1}}=\mathrm{2}/\left(\mathrm{0.95}{C}_{\mathrm{s}}d\right)$ and ${C}_{\mathrm{2}}=\mathrm{1.18}(\mathrm{2}\mathit{\pi}/{T}_{\mathrm{d}})$. The first two terms in Eq. (B4) constitute the net longwave radiation Q_{n}, the third term is the sensible heat flux into the atmosphere due to turbulent transports H_{0}, and the fourth term is the heat flux into the subsurface G. As our focus is on the stably stratified boundary layer we do not include the effects of albedo or latent heat in the heat budget. We also neglect the effects of the vegetation canopy.
The downwelling longwave radiation is given by
where Q_{c} is the cloud fraction, Q_{a} is the specific humidity, and T_{a} is the atmospheric temperature at a reference level z_{a} just above the Earth's surface (Staley and Jurica, 1972; Deardorff, 1978). For simplicity, Q_{a} is held constant at 0.003 kg kg^{−1}.
The equations are integrated in time using a fourthorder Runge–Kutte method. The spatial discretization is obtained using finite differences on a logarithmic grid. This grid has 50 vertical levels with a much finer resolution in the boundary layer than aloft and is determined by ${z}_{j}=\mathrm{\Delta}{z}_{\mathrm{0}}\frac{{r}^{j}\mathrm{1}}{r\mathrm{1}}$ with a stretch factor $r=\frac{\mathrm{\Delta}{z}_{j}}{\mathrm{\Delta}{z}_{j\mathrm{1}}}\simeq \mathrm{1.10}$ and an initial step size of Δz_{0}=2 m. The prognostic variables U,V, and T are defined at the z_{i} grid levels, while the diagnostic variables of H, τ, and Ri are defined at the z_{i+½} levels.
We define t=0 as the time when the shortwave radiation goes to zero, acknowledging the fact that observations indicate that the onset of the SBL can occur before this time (van Hooijdonk et al., 2017; van de Wiel et al., 2017, AM19a). The initial conditions were set in accordance with the logarithmic equations that arise from MOST. The nearneutral profiles for temperature and wind used to initialize the model are given by
where ${U}_{\mathrm{ext}}={U}_{\mathrm{g}}\mathit{\kappa}/\mathrm{ln}(h/{z}_{\mathrm{0}})$, ${V}_{\mathrm{ext}}={V}_{\mathrm{g}}\mathit{\kappa}/\mathrm{ln}(h/{z}_{\mathrm{0}})$, and θ_{ext}=0.01 K (Monin and Obukhov, 1954). For simplicity, we set $\frac{\partial p}{\partial y}=\mathrm{0}$ in all of our simulations, so U_{0} is identically zero at the start of the simulation.
The authors developed the ideas underlying this study together. CA executed the analysis and designed the draft of this manuscript. All authors contributed to improving the manuscript.
The authors declare that they have no conflict of interest.
We would like to thank a number of individuals and institutes for their willingness to share their tower data which were indispensable in carrying out this extensive comparison of SBL structures at different location sites. Our acknowledgements are presented in the order that the tower stations were presented in the paper, but we are equally thankful to all. The NOAA Earth System Research Laboratory's (ESRL) Physical Sciences Division (PSD) operates the Boulder Atmospheric Observatory (BAO) tower and makes the data publicly available. Information how to obtain the data is given at https://www.esrl.noaa.gov/psd/technology/bao/site/ (last access: 12 November 2019). The Royal Dutch Meteorological Institute (KNMI) is thanked for providing tower data from the Cabauw Experimental Site for Atmospheric Research (CESAR) which can be downloaded at http://www.cesardatabase.nl (last access: 12 November 2019). Felix Ament and Ingo Lange provided data from the Wettermast Hamburg of the Meteorological Institute of the University of Hamburg. Martin Kohler and the Institute for Meteorology and Climate Research of the Karlsruhe Institute of Technology (KIT) provided observations from the turbulence and meteorological mast in Karlsruhe. The team of the Los Alamos National Laboratory (LANL) are thanked for making data from the Environmental Monitoring Plan (EMP) freely available which can be downloaded from https://envweb.lanl.gov/weathermachine/data_request_green_weather.asp (last access: 12 November 2019). The French and Italian polar institutes (IPEV and PANRA, respectively) which operate the DomeC observatory in Antarctica are acknowledged for providing data through IPEV (program CALVA 1013), INSU/LEFE (GABLS4 and DEPHY2), and OSUG (GLACIOCLIM). The data were obtained on 22 May 2017 from http://www.lmd.jussieu.fr/~cgenthon/SiteCALVA/. Further information can be obtained from Christophe Genthon. The Bundesamt für Seeschifffahrt und Hydrographie (BSH), the Bundesministeriums für Wirtschaft und Energie (BMWi), the Projektträger Jülich (PTJ), and Olaf Outzen are thanked for granting access to the data from the offshore research platforms FINO1, FINO2, and FINO3 in Germany.
Carsten Abraham and Adam H. Monahan are supported by the Natural Sciences and Engineering Research Council Canada (NSERC). Amber M. Holdsworth acknowledges support by the DFO ACCASP program.
Finally, we thank three anonymous reviewers whose suggestions substantially improved this paper.
This research has been supported by the Natural Sciences and Engineering Research Council Canada (NSERC grant).
This paper was edited by Juan Restrepo and reviewed by three anonymous referees.
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 Abstract
 Introduction
 Data
 Brief summary of the hidden Markov model
 SBL regime statistics based on “freely running” Markov chains
 Stochastic parameterization for SBL regime dynamics
 Discussion and conclusions
 Data availability
 Appendix A
 Appendix B
 Author contributions
 Competing interests
 Acknowledgements
 Financial support
 Review statement
 References
 Abstract
 Introduction
 Data
 Brief summary of the hidden Markov model
 SBL regime statistics based on “freely running” Markov chains
 Stochastic parameterization for SBL regime dynamics
 Discussion and conclusions
 Data availability
 Appendix A
 Appendix B
 Author contributions
 Competing interests
 Acknowledgements
 Financial support
 Review statement
 References