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<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" xml:lang="en" dtd-version="3.0" article-type="research-article">
  <front>
    <journal-meta><journal-id journal-id-type="publisher">NPG</journal-id><journal-title-group>
    <journal-title>Nonlinear Processes in Geophysics</journal-title>
    <abbrev-journal-title abbrev-type="publisher">NPG</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Nonlin. Processes Geophys.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">1607-7946</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/npg-31-515-2024</article-id><title-group><article-title>A robust numerical method for the generation and propagation of periodic finite-amplitude internal waves in natural waters using high-accuracy simulations</article-title><alt-title>A numerical method for the generation of finite-amplitude internal waves</alt-title>
      </title-group>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Lloret</surname><given-names>Pierre</given-names></name>
          <email>pel62@cornell.edu</email>
        <ext-link>https://orcid.org/0000-0002-9356-4539</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Diamessis</surname><given-names>Peter J.</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff2">
          <name><surname>Stastna</surname><given-names>Marek</given-names></name>
          
        <ext-link>https://orcid.org/0000-0003-1770-2044</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff3">
          <name><surname>Thomsen</surname><given-names>Greg N.</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>School of Civil and Environmental Engineering, Cornell University, Ithaca, NY, USA</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Department of Applied Mathematics, University of Waterloo, Waterloo, ON, Canada</institution>
        </aff>
        <aff id="aff3"><label>3</label><institution>Wandering Wakhs Research, Austin, TX, USA</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Pierre Lloret (pel62@cornell.edu)</corresp></author-notes><pub-date><day>6</day><month>November</month><year>2024</year></pub-date>
      
      <volume>31</volume>
      <issue>4</issue>
      <fpage>515</fpage><lpage>533</lpage>
      <history>
        <date date-type="received"><day>12</day><month>April</month><year>2024</year></date>
           <date date-type="accepted"><day>19</day><month>August</month><year>2024</year></date>
           <date date-type="rev-recd"><day>12</day><month>August</month><year>2024</year></date>
           <date date-type="rev-request"><day>25</day><month>April</month><year>2024</year></date>
      </history>
      <permissions>
        <copyright-statement>Copyright: © 2024 Pierre Lloret et al.</copyright-statement>
        <copyright-year>2024</copyright-year>
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://npg.copernicus.org/articles/31/515/2024/npg-31-515-2024.html">This article is available from https://npg.copernicus.org/articles/31/515/2024/npg-31-515-2024.html</self-uri><self-uri xlink:href="https://npg.copernicus.org/articles/31/515/2024/npg-31-515-2024.pdf">The full text article is available as a PDF file from https://npg.copernicus.org/articles/31/515/2024/npg-31-515-2024.pdf</self-uri>
      <abstract><title>Abstract</title>

      <p id="d2e122">The design and implementation of boundary conditions for the robust generation and simulation of periodic finite-amplitude internal waves is examined in a quasi two-layer continuous stratification using a spectral-element-method-based incompressible flow solver. The commonly used Eulerian approach develops spurious, and potentially catastrophic small-scale numerical features near the wave-generating boundary in a non-linear stratification when  the parameter <inline-formula><mml:math id="M1" display="inline"><mml:mrow><mml:mi>A</mml:mi><mml:mo>/</mml:mo><mml:mo>(</mml:mo><mml:mi mathvariant="italic">δ</mml:mi><mml:mi>c</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is sufficiently larger than unity; <inline-formula><mml:math id="M2" display="inline"><mml:mi>A</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M3" display="inline"><mml:mi mathvariant="italic">δ</mml:mi></mml:math></inline-formula> are measures of the maximum wave-induced vertical velocity and pycnocline thickness, respectively, and <inline-formula><mml:math id="M4" display="inline"><mml:mi>c</mml:mi></mml:math></inline-formula> is the linear wave propagation speed. To this end, an Euler–Lagrange approach is developed and implemented to generate robust high-amplitude periodic deep-water internal waves. Central to this approach is to take into account the wave-induced (isopycnal) displacement of the pycnocline in both the vertical and (effectively) upstream directions. With amplitudes not restricted by the limits of linear theory, the Euler–Lagrange-generated waves maintain their structural integrity as they propagate away from the source. The advantages of the high-accuracy numerical method, whose minimal numerical dissipation cannot damp the above near-source spurious numerical features of the purely Eulerian case, can still be preserved and leveraged further along the wave propagation path through the robust reproduction of the non-linear adjustments of the waveform. The near- and far-source robustness of the optimized Euler–Lagrange approach is demonstrated for finite-amplitude waves in a sharp quasi two-layer continuous stratification representative of seasonally stratified lakes. The findings of this study provide an enabling framework for two-dimensional simulations of internal swash zones driven by well-developed non-linear internal waves and, ultimately, the accompanying turbulence-resolving three-dimensional simulations.</p>
  </abstract>
    
<funding-group>
<award-group id="gs1">
<funding-source>National Science Foundation</funding-source>
<award-id>1948251</award-id>
</award-group>
</funding-group>
</article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <label>1</label><title>Introduction</title>
      <p id="d2e173">Internal swash zones (ISZs) <xref ref-type="bibr" rid="bib1.bibx16 bib1.bibx59" id="paren.1"/> are regions which develop along sloping oceanic boundaries through the action of periodically incident internal waves (IWs) in a manner analogous to a surface swash zone on the beach, albeit at slower timescales (<inline-formula><mml:math id="M5" display="inline"><mml:mi>O</mml:mi></mml:math></inline-formula>(10 min) or longer) and over longer wavelengths (<inline-formula><mml:math id="M6" display="inline"><mml:mi>O</mml:mi></mml:math></inline-formula>(1 km) or longer) <xref ref-type="bibr" rid="bib1.bibx8 bib1.bibx15" id="paren.2"/>. In ISZs, energy can effectively flux down the scale to turbulence through either shear or convective instabilities in the IW interior, similarly to spilling or plunging breaker waves on the ocean surface <xref ref-type="bibr" rid="bib1.bibx8 bib1.bibx54" id="paren.3"/>, or the turbulent boundary layer established through the interaction of the IW-induced current with the seafloor <xref ref-type="bibr" rid="bib1.bibx62" id="paren.4"/>. In the latter context, particularly strong turbulence can be generated in the form of a near-bottom turbulent wake due to  boundary layer separation associated with the along-bed wave-induced adverse pressure gradient induced by either internal bores  or internal solitary waves <xref ref-type="bibr" rid="bib1.bibx23 bib1.bibx3" id="paren.5"/>. The above turbulence-generation mechanisms presumably conspire to drive a significant boundary–interior exchange <xref ref-type="bibr" rid="bib1.bibx38 bib1.bibx37" id="paren.6"/>, i.e., the exchange of water between the boundary layer and the stratified interior, which effectively drives mixing in the relatively less active stratified waterbody interior <xref ref-type="bibr" rid="bib1.bibx38 bib1.bibx2" id="paren.7"/>. The periodic shoaling and breaking of the above IWs in shallow environments, such as continental shelves or slopes, has a direct impact on the internal thermal equilibrium and biogeochemistry of the water column  <xref ref-type="bibr" rid="bib1.bibx59" id="paren.8"/>. The periodically on-slope incident IWs are important in the transfer of mass, whether they transport nutrients and plankton toward the surface in the inner shelf <xref ref-type="bibr" rid="bib1.bibx44" id="paren.9"/> or eject bottom boundary layer sediments as high as 40 m into the water column during a strong vertical updraft event associated with the passage of a non-linear internal wave of depression over the slope <xref ref-type="bibr" rid="bib1.bibx7" id="paren.10"/>. A similar class of long IW-driven phenomena of comparable biogeochemical importance also occurs on the slopes of lakes <xref ref-type="bibr" rid="bib1.bibx52 bib1.bibx60" id="paren.11"/> and has served as the primary motivator of the research presented here.</p>
      <p id="d2e225">The leading-order component of the periodic wave field forcing of an ISZ consists of a lower vertical-mode IW whose wavelength is <inline-formula><mml:math id="M7" display="inline"><mml:mi>O</mml:mi></mml:math></inline-formula>(50–100) longer than the water column depth – namely, in the form of oceanic internal tidal waves or the basin-scale internal seiche of a lake  <xref ref-type="bibr" rid="bib1.bibx16 bib1.bibx43 bib1.bibx50 bib1.bibx34 bib1.bibx31" id="paren.12"/>. In the latter case, the internal seiche is further associated with a lower horizontal mode that is itself associated with the longer dimension of the lake. Such long waves are commonly expected to be represented with sufficient fidelity through the use of linear IW theory <xref ref-type="bibr" rid="bib1.bibx49" id="paren.13"/> at, nonetheless, values of finite wave amplitude. Frequently, higher-frequency/shorter-wavelength highly non-linear features, such as turbulent/undular bores or internal solitary waves <xref ref-type="bibr" rid="bib1.bibx49" id="paren.14"/>, may be embedded within the longer incident IWs  <xref ref-type="bibr" rid="bib1.bibx23 bib1.bibx33 bib1.bibx53" id="paren.15"/>.</p>
      <p id="d2e247">The primary objective of this paper is the development of a robust numerical method for the generation and subsequent development of the longer component of the deep-water wave forcing at finite amplitude.  The generated wave should have an amplitude that is not constrained by the limits of linear theory.  Practically, this corresponds to wave-induced maximum isopycnal displacements that are at least <inline-formula><mml:math id="M8" display="inline"><mml:mrow><mml:mn mathvariant="normal">5</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="italic">%</mml:mi></mml:mrow></mml:math></inline-formula> of the total water column depth. The wave should also remain sufficiently robust near the source and, with an equal degree of robustness, non-linearly adjust its waveform as it propagates along the waveguide. In this regard, central to this paper's scope is that the background stratification extends beyond an uniform density gradient <xref ref-type="bibr" rid="bib1.bibx51" id="paren.16"/> and is actually subject to variation in the vertical, as characterized by the presence of a distinct pycnocline which is commonly a close approximation of the  in situ background profiles in the stratified ocean or lakes. Finally, an additional essential ingredient of this study, is that a high-accuracy discretization is used – specifically, a nodal spectral element method <xref ref-type="bibr" rid="bib1.bibx12" id="paren.17"/>. The particular discretization technique enables the optimal resolution of the generated waves,  their non-linear adjustments away from the source and ultimately (though not explicitly considered here) the associated instabilities/turbulence upon encountering the waves with the slope.</p>
      <p id="d2e267">In the laboratory, one approach to generating periodic long internal IWs is by tilting and releasing the actual laboratory tank <xref ref-type="bibr" rid="bib1.bibx4" id="paren.18"/>: the resulting horizontal standing wave is a lab-scale surrogate of the basin-scale internal seiche generated in a long stratified lake in response to a strong wind event <xref ref-type="bibr" rid="bib1.bibx1" id="paren.19"/>. An equivalent type of horizontal standing wave may be generated in  a numerical simulation within a long rectangular computational domain using an initial condition consisting of a tilted pycnocline <xref ref-type="bibr" rid="bib1.bibx21" id="paren.20"/>. One issue with the tilting-based wave-generation approach may be that it immediately produces finite velocities across the whole domain/tank when one would prefer waves propagating into an initially quiescent slope region.  In many cases, the standing wave will break down into a propagating wave train <xref ref-type="bibr" rid="bib1.bibx21" id="paren.21"/>.</p>
      <p id="d2e283">An alternative, more flexible and effectively more controllable  wave-generation approach involves introducing a form of deep-water (far from the slope) oscillatory wave excitation. Such an approach would ideally allow for a sufficiently long propagation distance in uniform depth waters, prior to the wave encountering the slope, which permits the generated IW to undergo any required non-linear adjustments. To this end, in the deep-water section of a laboratory tank, a horizontally oscillating paddle <xref ref-type="bibr" rid="bib1.bibx56 bib1.bibx42 bib1.bibx19" id="paren.22"/>,  a vertically oscillating semi-cylinder <xref ref-type="bibr" rid="bib1.bibx41" id="paren.23"/> or an array of plates vertically stacked on an eccentric camshaft <xref ref-type="bibr" rid="bib1.bibx39 bib1.bibx40" id="paren.24"/> have been used. It is worth noting that all the above experimental studies generated relatively short waves as represented by values of aspect ratio <inline-formula><mml:math id="M9" display="inline"><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>/</mml:mo><mml:mi>H</mml:mi></mml:mrow></mml:math></inline-formula> and non-dimensional amplitude <inline-formula><mml:math id="M10" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">η</mml:mi><mml:mtext>max</mml:mtext></mml:msub><mml:mo>/</mml:mo><mml:mi>H</mml:mi></mml:mrow></mml:math></inline-formula>; <inline-formula><mml:math id="M11" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M12" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">η</mml:mi><mml:mtext>max</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M13" display="inline"><mml:mi>H</mml:mi></mml:math></inline-formula> are the IW horizontal wavelength, IW-induced maximum isopycnal displacement and water depth, respectively. Reported directly, or inferred, values of <inline-formula><mml:math id="M14" display="inline"><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>/</mml:mo><mml:mi>H</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M15" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">η</mml:mi><mml:mtext>max</mml:mtext></mml:msub><mml:mo>/</mml:mo><mml:mi>H</mml:mi></mml:mrow></mml:math></inline-formula> lie in the range <inline-formula><mml:math id="M16" display="inline"><mml:mrow><mml:mo>[</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">12.5</mml:mn><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M17" display="inline"><mml:mrow><mml:mo>[</mml:mo><mml:mn mathvariant="normal">0.0075</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">0.2</mml:mn><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>, respectively, in the above laboratory studies wherever directly identifiable or inferable. Such a maximum pycnocline displacement range corresponds to a wave Froude number, <inline-formula><mml:math id="M18" display="inline"><mml:mrow><mml:mi mathvariant="italic">Fr</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>U</mml:mi><mml:mtext>max</mml:mtext></mml:msub><mml:mo>/</mml:mo><mml:mi>c</mml:mi></mml:mrow></mml:math></inline-formula>, with a value of <inline-formula><mml:math id="M19" display="inline"><mml:mrow><mml:mo>[</mml:mo><mml:mn mathvariant="normal">0.02</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">0.35</mml:mn><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>; <inline-formula><mml:math id="M20" display="inline"><mml:mrow><mml:msub><mml:mi>U</mml:mi><mml:mtext>max</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M21" display="inline"><mml:mi>c</mml:mi></mml:math></inline-formula> are the maximum wave-induced horizontal current and wave propagation speed.</p>
      <p id="d2e461">The high-order-accuracy turbulence-resolving fully non-linear and non-hydrostatic three-dimensional simulations of <xref ref-type="bibr" rid="bib1.bibx58" id="text.25"/> are one of the few computational studies so far which have considered the generation and incidence of a periodic long wave and on a relatively steep slope. The wave aspect ratio and wave Froude number can be inferred as <inline-formula><mml:math id="M22" display="inline"><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>/</mml:mo><mml:mi>H</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">48</mml:mn></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M23" display="inline"><mml:mrow><mml:mi mathvariant="italic">Fr</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.1385</mml:mn></mml:mrow></mml:math></inline-formula>. Note that the work of Winters considered only a uniform background stratification. Moreover, Winters' generated waves were allowed to have a distance lower than one prescribed wavelength from the source to propagate until the slope most likely precluding any deep-water non-linear adjustments of the waveform.</p>
      <p id="d2e495">To the authors' best knowledge, the only other computational study which has examined the periodic generation, the propagation away from the source over at least one wavelength and the incidence of long internal waves on a slope is the two-dimensional investigation by <xref ref-type="bibr" rid="bib1.bibx9" id="text.26"/>. The wave aspect ratios considered in this study are high and can be inferred to be residing in the range <inline-formula><mml:math id="M24" display="inline"><mml:mrow><mml:mo>[</mml:mo><mml:mn mathvariant="normal">50</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">400</mml:mn><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula> while noting the very small ratio of  computational domain depth to length. The wave-based Froude number values considered are in the range <inline-formula><mml:math id="M25" display="inline"><mml:mrow><mml:mo>[</mml:mo><mml:mn mathvariant="normal">0.05</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">0.4</mml:mn><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>. Furthermore, the subset of simulations that use a two-layer stratification (and not a linear one) have a thick pycnocline and focus on the aspect ratio of <inline-formula><mml:math id="M26" display="inline"><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>/</mml:mo><mml:mi>H</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">200</mml:mn></mml:mrow></mml:math></inline-formula> and a wave-based Froude number between 0.1 and 0.2. Note also that the curvature of the density profile at the base of the pycnocline is reduced by introducing a weakly stratified layer below. The numerical dissipation inherently built into the parameterizations of the regional ocean modeling code (Regional Ocean Modeling System, ROMS) used in this study could also effectively damp any spurious numerical features near the wave-generating deep-water boundary.</p>
      <p id="d2e549">Note that the studies of <xref ref-type="bibr" rid="bib1.bibx35 bib1.bibx36" id="text.27"/> and <xref ref-type="bibr" rid="bib1.bibx57" id="text.28"/> also considered a non-uniform stratification but positioned the wave-generating source only a fraction of the target wavelength from the slope. The generated waves, therefore, were not afforded an adequate propagation distance to undergo any non-linear adjustments before encountering the slope. Additionally, per this paper's focus on periodic IW simulation with high-accuracy methods and high resolution, the nesting-based robust mode-1 long internal tide generation within a regional-scale nonhydrostatic model <xref ref-type="bibr" rid="bib1.bibx46" id="paren.29"/>  is not pertinent to the scope of this study as it relies on low-pass filtering and sponge layers.</p>
      <p id="d2e561">The  laboratory and computational studies discussed above consider generated waves that may be deemed either short or long. Even when high-accuracy/resolution numerical methods are derived and efficiently implemented on a state-of-the-art  high-performance computing platform, a computational study aiming to sufficiently resolve instability/turbulence formation due to sufficiently high-amplitude waves over a limited number cycles of an ISZ is practically limited to a wave aspect ratio in the range <inline-formula><mml:math id="M27" display="inline"><mml:mrow><mml:mo>[</mml:mo><mml:mn mathvariant="normal">40</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">50</mml:mn><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>. This is the aspect ratio regime accessed by the work of Winters <xref ref-type="bibr" rid="bib1.bibx58" id="paren.30"/>, which is, however, limited to a linear stratification. The choice of a linear stratification effectively shielded this study from the challenges that emerge when forcing internal waves in a pycnocline-dominated stratification profile. As will be demonstrated later in this paper, the generation of high-amplitude periodic internal waves in more general, non-linear stratifications for waves operating in this intermediate aspect ratio range is confronted with non-trivial error if commonly used deep-water forcing approaches, such as those employed by Winters (2015), Dauhajre et al. (2021), are actually employed.  The minimal numerical dissipation of a high-order-accuracy  numerical method can allow this error to grow substantially. The stability of the simulation can thus be effectively undermined, and one can no longer leverage the high accuracy of the method for representing non-linear wave adjustments in deeper water and the finer-scale features once the slope is reached.</p>
      <p id="d2e583">Thus, from a computational point of view, a relatively simple technique for generating larger-amplitude IWs for general stratifications in deep water is highly desirable. This is often achieved by choosing a form of boundary conditions at the boundary away from the slope region.  For most field-relevant stratifications, a pycnocline dominates the stratification, and the vertical motion of the pycnocline is the clearest manifestation of internal waves.  Historically, descriptions of internal waves typically built on a linearized theory and the literature have examples of two different choices for the vertical coordinate: one which uses the physical coordinate <inline-formula><mml:math id="M28" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> and one which uses the upstream height of each isopycnal (and, more concretely, the upstream height of the dominant pycnocline) <xref ref-type="bibr" rid="bib1.bibx17 bib1.bibx61" id="paren.31"/>.  Since the former uses the physical coordinates, it is usually labeled as the Eulerian theory of linear internal waves.  The latter, in contrast, is labeled the Euler–Lagrange theory because the horizontal coordinate is the physical coordinate <inline-formula><mml:math id="M29" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula>, while the vertical coordinate is the upstream coordinate, often written as <inline-formula><mml:math id="M30" display="inline"><mml:mrow><mml:mi>y</mml:mi><mml:mo>=</mml:mo><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, where <inline-formula><mml:math id="M31" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula> is the isopycnal displacement.  Both the Eulerian <xref ref-type="bibr" rid="bib1.bibx29" id="paren.32"/> and Euler–Lagrange theories <xref ref-type="bibr" rid="bib1.bibx17" id="paren.33"/> have been used as a basis for multi-scale asymptotic expansions that extend the wave description to small but finite-amplitude waves (i.e., weak non-linearity) and waves of finite wavelength (i.e., weak dispersion).  These lead to model equations in the Korteweg–de Vries family.  The use of the upstream isopycnal height has found general use in the description of stratified flow in both the classical <xref ref-type="bibr" rid="bib1.bibx61" id="paren.34"/> and modern <xref ref-type="bibr" rid="bib1.bibx49" id="paren.35"/> contexts. In the simulation context, the desire to generate finite-amplitude waves in a situation with a strong pycnocline implies that forcing methodologies based on the Eulerian linear wave theory may not yield robust results. The Euler–Lagrange theory offers an alternative, if algebraically more complex, development pathway.</p>
      <p id="d2e655">In this paper, by following an Eulerian and an Euler–Lagrange approach <xref ref-type="bibr" rid="bib1.bibx55 bib1.bibx17" id="paren.36"/>, different types of time-dependent periodic wave-generating boundary conditions are derived with a particular emphasis on the subtleties associated with a continuous two-layer background stratification. The efficacy of each approach in generating a robust deep-water periodic finite-amplitude IW train and enabling any non-linear adjustments of the wave-train is  thereafter  assessed.</p>
</sec>
<sec id="Ch1.S2">
  <label>2</label><title>Problem setup and model formulation</title>
<sec id="Ch1.S2.SS1">
  <label>2.1</label><title>Problem geometry</title>
      <p id="d2e676">The canonical flow examined in this paper is the propagation of a two-dimensional  finite amplitude periodically forced internal wave in a  quasi two-layer continuous stratification. The computational domain is a two-dimensional rectangle of dimensions <inline-formula><mml:math id="M32" display="inline"><mml:mrow><mml:mi>L</mml:mi><mml:mo>×</mml:mo><mml:mi>H</mml:mi></mml:mrow></mml:math></inline-formula> and  is stratified in vertical direction <inline-formula><mml:math id="M33" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> with a vertically varying buoyancy frequency <inline-formula><mml:math id="M34" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, where
            <disp-formula id="Ch1.E1" content-type="numbered"><label>1</label><mml:math id="M35" display="block"><mml:mrow><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>≡</mml:mo><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi>g</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mover accent="true"><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d2e759">Restricting one's focus to the Boussinesq approximation, the total density is decomposed as the addition of a reference density, <inline-formula><mml:math id="M36" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>; a stratification, <inline-formula><mml:math id="M37" display="inline"><mml:mover accent="true"><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula>; and a perturbation, <inline-formula><mml:math id="M38" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> <xref ref-type="bibr" rid="bib1.bibx27" id="paren.37"/>:
            <disp-formula id="Ch1.E2" content-type="numbered"><label>2</label><mml:math id="M39" display="block"><mml:mrow><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:mover accent="true"><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>+</mml:mo><mml:msup><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>,</mml:mo><mml:mspace linebreak="nobreak" width="0.33em"/><mml:mtext>with</mml:mtext><mml:mspace linebreak="nobreak" width="0.33em"/><mml:msup><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:mo>≪</mml:mo><mml:mover accent="true"><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>≪</mml:mo><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d2e880">The quasi two-layer continuous stratification <inline-formula><mml:math id="M40" display="inline"><mml:mover accent="true"><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula> (Fig. <xref ref-type="fig" rid="Ch1.F1"/>a) is defined by
            <disp-formula id="Ch1.E3" content-type="numbered"><label>3</label><mml:math id="M41" display="block"><mml:mrow><mml:mover accent="true"><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:msubsup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">0</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mi mathvariant="italic">δ</mml:mi></mml:mrow><mml:mi>g</mml:mi></mml:mfrac></mml:mstyle><mml:mi>tanh⁡</mml:mi><mml:mfenced open="(" close=")"><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">p</mml:mi></mml:msub></mml:mrow><mml:mi mathvariant="italic">δ</mml:mi></mml:mfrac></mml:mstyle></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M42" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:msubsup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">0</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mi mathvariant="italic">δ</mml:mi><mml:mo>/</mml:mo><mml:mi>g</mml:mi></mml:mrow></mml:math></inline-formula> is a measure of the density difference across the pycnocline, <inline-formula><mml:math id="M43" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is a reference buoyancy frequency equal to the peak value of <inline-formula><mml:math id="M44" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> in the water column, <inline-formula><mml:math id="M45" display="inline"><mml:mi mathvariant="italic">δ</mml:mi></mml:math></inline-formula> is a measure of the pycnocline thickness and <inline-formula><mml:math id="M46" display="inline"><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">p</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the position of the pycnocline's center.</p>

      <fig id="Ch1.F1"><label>Figure 1</label><caption><p id="d2e1025"><bold>(a)</bold> A two-layer continuous stratification, <inline-formula><mml:math id="M47" display="inline"><mml:mover accent="true"><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula>, defined by its density jump, <inline-formula><mml:math id="M48" display="inline"><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msubsup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">0</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mi mathvariant="italic">δ</mml:mi></mml:mrow><mml:mi>g</mml:mi></mml:mfrac></mml:mstyle></mml:mrow></mml:math></inline-formula>; its position, <inline-formula><mml:math id="M49" display="inline"><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">p</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>; and its thickness, <inline-formula><mml:math id="M50" display="inline"><mml:mi mathvariant="italic">δ</mml:mi></mml:math></inline-formula>. <bold>(b)</bold> Corresponding vertical structure eigenfunction, <inline-formula><mml:math id="M51" display="inline"><mml:mrow><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, which is the solution to the eigenvalue problem in Eq. (<xref ref-type="disp-formula" rid="Ch1.E16"/>).</p></caption>
          <graphic xlink:href="https://npg.copernicus.org/articles/31/515/2024/npg-31-515-2024-f01.png"/>

          <p id="d2e1110">.</p>
        </fig>

      <p id="d2e1114">The finite-amplitude internal wave of wavenumber <inline-formula><mml:math id="M52" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula> and angular frequency <inline-formula><mml:math id="M53" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula> is generated through a forcing implemented within the left boundary conditions. Details on the exact derivation of the deep-water boundary conditions is covered in Sect. <xref ref-type="sec" rid="Ch1.S3"/>.</p>
</sec>
<sec id="Ch1.S2.SS2">
  <label>2.2</label><title>Governing equations</title>
      <p id="d2e1141">The governing equations for the problem are the incompressible Navier–Stokes equations (INSEs) under the Boussinesq approximation, written as follows:

                <disp-formula specific-use="gather" content-type="numbered"><mml:math id="M54" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E4"><mml:mtd><mml:mtext>4</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="bold">u</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mi mathvariant="bold">u</mml:mi><mml:mo>⋅</mml:mo><mml:mi mathvariant="normal">∇</mml:mi><mml:mi mathvariant="bold">u</mml:mi><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi>g</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msup><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:mi mathvariant="bold-italic">k</mml:mi><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mi mathvariant="normal">∇</mml:mi><mml:msup><mml:mi>p</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:mo>+</mml:mo><mml:mi mathvariant="italic">ν</mml:mi><mml:msup><mml:mi mathvariant="normal">∇</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi mathvariant="bold">u</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E5"><mml:mtd><mml:mtext>5</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:msup><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mi mathvariant="bold">u</mml:mi><mml:mo>⋅</mml:mo><mml:mi mathvariant="normal">∇</mml:mi><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="italic">κ</mml:mi><mml:msup><mml:mi mathvariant="normal">∇</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:msup><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E6"><mml:mtd><mml:mtext>6</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi mathvariant="normal">∇</mml:mi><mml:mo>⋅</mml:mo><mml:mi mathvariant="bold">u</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula></p>
      <p id="d2e1303">The simulations reported here will be limited to two dimensions on the <inline-formula><mml:math id="M55" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> plane. Therefore, <inline-formula><mml:math id="M56" display="inline"><mml:mi mathvariant="bold">u</mml:mi></mml:math></inline-formula> will be limited to its two components, <inline-formula><mml:math id="M57" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:mi>u</mml:mi><mml:mo>,</mml:mo><mml:mi>w</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. Furthermore, <inline-formula><mml:math id="M58" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> is the density perturbation as defined in Eq. (<xref ref-type="disp-formula" rid="Ch1.E2"/>) and <inline-formula><mml:math id="M59" display="inline"><mml:mrow><mml:msup><mml:mi>p</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> is the pressure perturbation defined as the deviation from the hydrostatic pressure. It is important to note that the hydrostatic balance between <inline-formula><mml:math id="M60" display="inline"><mml:mrow><mml:mover accent="true"><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and the corresponding background pressure field has been subtracted from Eq. (<xref ref-type="disp-formula" rid="Ch1.E5"/>). Here, <inline-formula><mml:math id="M61" display="inline"><mml:mi mathvariant="bold-italic">k</mml:mi></mml:math></inline-formula> is the unit vector in the positive direction, <inline-formula><mml:math id="M62" display="inline"><mml:mi mathvariant="italic">ν</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M63" display="inline"><mml:mi mathvariant="italic">κ</mml:mi></mml:math></inline-formula> are the constant kinematic viscosity and mass diffusivity, and <inline-formula><mml:math id="M64" display="inline"><mml:mi>g</mml:mi></mml:math></inline-formula> is the gravitational constant.</p>
      <p id="d2e1418">At the deep-water wave-generating boundary condition, Dirichlet time-dependent boundary conditions are enforced as follows:

                <disp-formula specific-use="gather" content-type="numbered"><mml:math id="M65" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E7"><mml:mtd><mml:mtext>7</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi mathvariant="bold">u</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:msub><mml:mi>f</mml:mi><mml:mi mathvariant="bold">u</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mfenced close=")" open="("><mml:mtable class="matrix" columnalign="center" framespacing="0em"><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mi>u</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mi>w</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E8"><mml:mtd><mml:mtext>8</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:msub><mml:mi>f</mml:mi><mml:mi mathvariant="italic">ρ</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            where <inline-formula><mml:math id="M66" display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mi>u</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M67" display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mi>w</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M68" display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mi mathvariant="italic">ρ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are explicitly described in Sect. <xref ref-type="sec" rid="Ch1.S3"/> for the different forcing approaches considered here. A free-slip boundary condition is prescribed for the velocity field along all other boundaries, and the density is subject to a boundary condition of zero  diffusive flux:
            <disp-formula id="Ch1.E9" content-type="numbered"><label>9</label><mml:math id="M69" display="block"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="italic">ρ</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>n</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mi mathvariant="normal">∇</mml:mi><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo>⋅</mml:mo><mml:mi mathvariant="bold">n</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
</sec>
<sec id="Ch1.S2.SS3">
  <label>2.3</label><title>Wave-based dimensionless parameters </title>
      <p id="d2e1638">The definition of the wave-based Reynolds number, <inline-formula><mml:math id="M70" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">Re</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, is given by
            <disp-formula id="Ch1.E10" content-type="numbered"><label>10</label><mml:math id="M71" display="block"><mml:mrow><mml:msub><mml:mi mathvariant="italic">Re</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub><mml:mo>≡</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mi>c</mml:mi></mml:mrow><mml:mi mathvariant="italic">ν</mml:mi></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M72" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula> is the associated wavelength and <inline-formula><mml:math id="M73" display="inline"><mml:mrow><mml:mi>c</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>/</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:math></inline-formula> the wave-speed of the prescribed wave. The particular wave-based Reynolds number is independent of the wave amplitude and quantifies the strength of viscous effects during the time required for the wave to propagate a distance of one wavelength <inline-formula><mml:math id="M74" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula>.</p>
      <p id="d2e1706">The wave aspect ratio, <inline-formula><mml:math id="M75" display="inline"><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>/</mml:mo><mml:mi>H</mml:mi></mml:mrow></mml:math></inline-formula>, is a metric used to describe how long the wave is in relation to the water depth. Additionally, in the context of this study, it effectively represents the upstream variation in wave-induced flow fields at the wave-generating deep-water boundary which then determines which variant of an Euler–Lagrange approach must be used.</p>
      <p id="d2e1721">The Froude number quantifies the strength of non-linear effects within the wave against the restoring effect of buoyancy and is defined as
            <disp-formula id="Ch1.E11" content-type="numbered"><label>11</label><mml:math id="M76" display="block"><mml:mrow><mml:mi mathvariant="italic">Fr</mml:mi><mml:mo>≡</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msub><mml:mi>U</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow><mml:mi>c</mml:mi></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M77" display="inline"><mml:mrow><mml:msub><mml:mi>U</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is the maximum wave-induced horizontal fluid velocity.</p>
</sec>
<sec id="Ch1.S2.SS4">
  <label>2.4</label><title>Numerical method</title>
      <p id="d2e1765">The numerical method used to generate the simulation data sets examined in this paper is a  high-order continuous Galerkin numerical method, originally developed for the simulation of non-linear, non-hydrostatic internal waves and turbulence in long computational domains with complex bathymetry. The time discretization is semi-implicit and relies on a third-order stiffly stable scheme <xref ref-type="bibr" rid="bib1.bibx26" id="paren.38"/>. The spatial discretization is based on the nodal spectral element method. Such a discretization enables robust wave propagation against numerical dispersion and diffusion effects, a highly accurate representation of complex geometries and a flexibility in localized resolution – namely, the across pycnocline. Details on the discretization of the Poisson pressure equation and its Laplacian operator (which are directly applicable to the viscous-term treatment) may be found in Appendix <xref ref-type="sec" rid="App1.Ch1.S1"/>. More details on the numerical model may be found elsewhere <xref ref-type="bibr" rid="bib1.bibx12" id="paren.39"/>.</p>
      <p id="d2e1776">Such a temporal discretization leads to a Poisson equation for the pseudo-pressure, <inline-formula><mml:math id="M78" display="inline"><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula>, at time level <inline-formula><mml:math id="M79" display="inline"><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>:
            <disp-formula id="Ch1.E12" content-type="numbered"><label>12</label><mml:math id="M80" display="block"><mml:mrow><mml:msup><mml:mi mathvariant="normal">∇</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:msup><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>=</mml:mo><mml:mi mathvariant="normal">∇</mml:mi><mml:mo>⋅</mml:mo><mml:mfenced close=")" open="("><mml:mrow><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mover accent="true"><mml:mi mathvariant="bold">u</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M81" display="inline"><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:math></inline-formula> is defined as
            <disp-formula id="Ch1.E13" content-type="numbered"><label>13</label><mml:math id="M82" display="block"><mml:mrow><mml:munderover><mml:mo movablelimits="false">∫</mml:mo><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:munderover><mml:mi mathvariant="normal">∇</mml:mi><mml:msup><mml:mi>p</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi><mml:mi mathvariant="normal">∇</mml:mi><mml:msup><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mrow><mml:mi>n</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          For the temporal discretization used in this work, the appropriate boundary conditions for the  pressure Poisson equation are taken from <xref ref-type="bibr" rid="bib1.bibx26" id="text.40"/>. The particular boundary condition is augmented by a term which accounts for the time dependence of the wave-generating boundary condition the boundary-normal velocity:

                <disp-formula id="Ch1.E14" content-type="numbered"><label>14</label><mml:math id="M83" display="block"><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mtable columnspacing="1em" class="aligned" rowspacing="0.2ex" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mover accent="true"><mml:mi>p</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>n</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi mathvariant="bold">n</mml:mi><mml:mo>⋅</mml:mo><mml:mfenced close="]" open="["><mml:mrow><mml:msubsup><mml:mo movablelimits="false">∑</mml:mo><mml:mrow><mml:mi>q</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow><mml:mrow><mml:msub><mml:mi>J</mml:mi><mml:mi>e</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msubsup><mml:msub><mml:mi mathvariant="italic">β</mml:mi><mml:mi>q</mml:mi></mml:msub><mml:mi mathvariant="bold">N</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:msup><mml:mi mathvariant="bold">u</mml:mi><mml:mrow><mml:mi mathvariant="bold">n</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="bold">q</mml:mi></mml:mrow></mml:msup></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:mi mathvariant="italic">ν</mml:mi><mml:msub><mml:mi mathvariant="italic">β</mml:mi><mml:mi>q</mml:mi></mml:msub><mml:mi mathvariant="bold">L</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:msup><mml:mi mathvariant="bold">u</mml:mi><mml:mrow><mml:mi mathvariant="bold">n</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="bold">q</mml:mi></mml:mrow></mml:msup></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>f</mml:mi><mml:mi mathvariant="bold">u</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:math></disp-formula>

          where coefficient <inline-formula><mml:math id="M84" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">β</mml:mi><mml:mi>q</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> correspond to a third-order stiffly stable scheme and <inline-formula><mml:math id="M85" display="inline"><mml:mi mathvariant="bold">N</mml:mi></mml:math></inline-formula>  and <inline-formula><mml:math id="M86" display="inline"><mml:mi mathvariant="bold">L</mml:mi></mml:math></inline-formula> are the non-linear and linear operators, respectively <xref ref-type="bibr" rid="bib1.bibx26" id="paren.41"/>.</p>
</sec>
</sec>
<sec id="Ch1.S3">
  <label>3</label><title>Deep-water wave-generating boundary conditions</title>
      <p id="d2e2093">The generation of finite-amplitude periodic internal waves is a key component of this study. To this end, we examine the spatio-temporal structure of the generated wave as prescribed by linear theory, which is introduced into the computational domain in the form of time-dependent, vertically variable Dirichlet conditions at the deep-water boundary.</p>
<sec id="Ch1.S3.SS1">
  <label>3.1</label><title>Internal-wave vertical structure: mathematical descriptions</title>
      <p id="d2e2103">The fluid's top and bottom boundaries naturally confine the propagation of internal waves so that it occurs in the horizontal direction, along a waveguide formed by the naturally occurring density stratification as shown in Fig. <xref ref-type="fig" rid="Ch1.F2"/>. This density stratification, which only varies in the <inline-formula><mml:math id="M87" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> direction, is often dominated by a region of rapid change (the so-called pycnocline), and it is the up and down motion of this pycnocline that is essential for an accurate description of wave motion.</p>

      <fig id="Ch1.F2"><label>Figure 2</label><caption><p id="d2e2117">Schematic of the generation of a mode-1 wave in the waveguide analogy using time-dependent boundary conditions for a two-layer stratification, highlighting the pycnocline displacement, <inline-formula><mml:math id="M88" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>.</p></caption>
          <graphic xlink:href="https://npg.copernicus.org/articles/31/515/2024/npg-31-515-2024-f02.png"/>

        </fig>

      <p id="d2e2133">Mathematically, internal waves can be represented as a separation of variable solutions, with a fixed or standing wave structure in the vertical and a propagating waveform (a plane wave in the linear theory) in the horizontal. If we choose the propagation direction to be from left to right and assume the waves to be periodic in <inline-formula><mml:math id="M89" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M90" display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula>, the vertical component of velocity will have the form
            <disp-formula id="Ch1.E15" content-type="numbered"><label>15</label><mml:math id="M91" display="block"><mml:mrow><mml:mi>w</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mi>exp⁡</mml:mi><mml:mfenced close="]" open="["><mml:mrow><mml:mi>i</mml:mi><mml:mo>(</mml:mo><mml:mi>k</mml:mi><mml:mi>x</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">ω</mml:mi><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
          The equation governing the vertical structure may be derived by linearizing the stratified Euler equations under the Boussinesq approximation (which in turn result from dropping the viscous/diffusive terms in Eq. <xref ref-type="disp-formula" rid="Ch1.E4"/>), performing a series of algebraic manipulations to leave an equation for <inline-formula><mml:math id="M92" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> only and introducing the wave ansatz above. The buoyancy frequency profile, <inline-formula><mml:math id="M93" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, is assumed to be given, and for the scope of this paper, we are neglecting any form of background shear current. <inline-formula><mml:math id="M94" display="inline"><mml:mrow><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> then becomes the solution of the following linear eigenvalue problem <xref ref-type="bibr" rid="bib1.bibx18" id="paren.42"/> for either <inline-formula><mml:math id="M95" display="inline"><mml:mi mathvariant="italic">ω</mml:mi></mml:math></inline-formula> or <inline-formula><mml:math id="M96" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>,  with the other parameter assumed to be specified:
            <disp-formula id="Ch1.E16" content-type="numbered"><label>16</label><mml:math id="M97" display="block"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mi>W</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:msup><mml:mi>z</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:msup><mml:mi>k</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="italic">ω</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow><mml:mrow><mml:msup><mml:mi mathvariant="italic">ω</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mi>W</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d2e2322">Both top and bottom boundaries are assumed to be impermeable, such that
            <disp-formula id="Ch1.E17" content-type="numbered"><label>17</label><mml:math id="M98" display="block"><mml:mrow><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mo>-</mml:mo><mml:mi>H</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d2e2357">For a given wave number <inline-formula><mml:math id="M99" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula>, an infinite number of eigenfunctions <inline-formula><mml:math id="M100" display="inline"><mml:mrow><mml:msub><mml:mi>W</mml:mi><mml:mi>n</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> with their corresponding eigenvalue <inline-formula><mml:math id="M101" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ω</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> exist, each one representing a different vertical mode (i.e., mode-1 does not cross zero in the interior of the fluid, mode-2 crosses zero once in the interior of the fluid, etc.). Therefore, the general solution <inline-formula><mml:math id="M102" display="inline"><mml:mrow><mml:mi>w</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> can be represented by a superposition of such modes, using an arbitrary constant, <inline-formula><mml:math id="M103" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mi>n</mml:mi></mml:msub><mml:mo>∈</mml:mo><mml:mi mathvariant="double-struck">C</mml:mi></mml:mrow></mml:math></inline-formula>:
            <disp-formula id="Ch1.E18" content-type="numbered"><label>18</label><mml:math id="M104" display="block"><mml:mrow><mml:mi>w</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:munder><mml:mo movablelimits="false">∑</mml:mo><mml:mi>n</mml:mi></mml:munder><mml:msub><mml:mi>W</mml:mi><mml:mi>n</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mfenced open="[" close="]"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mi>n</mml:mi></mml:msub><mml:mi>exp⁡</mml:mi><mml:mo>(</mml:mo><mml:mi>i</mml:mi><mml:mo>(</mml:mo><mml:mi>k</mml:mi><mml:mi>x</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi mathvariant="italic">ω</mml:mi><mml:mi>n</mml:mi></mml:msub><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>)</mml:mo></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d2e2500">Details regarding the derivation of the solution in the linear stratification case, which are pertinent to the discussion in Sect. <xref ref-type="sec" rid="Ch1.S4"/>, are provided in Appendix <xref ref-type="sec" rid="App1.Ch1.S2"/>.</p>
</sec>
<sec id="Ch1.S3.SS2">
  <label>3.2</label><title>Eulerian approach</title>
      <p id="d2e2515">The above description computes <inline-formula><mml:math id="M105" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> as a function of a fixed coordinate system.  This is often called the “lab frame”, and the theory is labeled as Eulerian <xref ref-type="bibr" rid="bib1.bibx27" id="paren.43"/>. In this first approach to generate a finite-amplitude periodic IW, a two-dimensional perturbation field <inline-formula><mml:math id="M106" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mi>u</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi>w</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:msubsup><mml:mi mathvariant="italic">ρ</mml:mi><mml:mi mathvariant="normal">E</mml:mi><mml:mo>′</mml:mo></mml:msubsup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is constructed from the solution of the eigenvalue problem for <inline-formula><mml:math id="M107" display="inline"><mml:mrow><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> via the following set of manipulations of the linearized, stratified Euler equations under the Boussinesq approximation:

                <disp-formula specific-use="gather" content-type="numbered"><mml:math id="M108" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E19"><mml:mtd><mml:mtext>19</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi mathvariant="bold">u</mml:mi><mml:mi mathvariant="bold">E</mml:mi></mml:msub></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi>g</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:msubsup><mml:mi mathvariant="italic">ρ</mml:mi><mml:mi mathvariant="normal">E</mml:mi><mml:mo>′</mml:mo></mml:msubsup><mml:mi mathvariant="bold-italic">k</mml:mi><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:mi mathvariant="normal">∇</mml:mi><mml:msup><mml:mi>p</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E20"><mml:mtd><mml:mtext>20</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:msubsup><mml:mi mathvariant="italic">ρ</mml:mi><mml:mi mathvariant="normal">E</mml:mi><mml:mo>′</mml:mo></mml:msubsup></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mi>w</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mover accent="true"><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E21"><mml:mtd><mml:mtext>21</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi mathvariant="normal">∇</mml:mi><mml:mo>⋅</mml:mo><mml:msub><mml:mi mathvariant="bold">u</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula></p>
      <p id="d2e2715">As mentioned above, such an approach can be considered Eulerian since we are looking at the evolution in time of the wave-induced velocity and density fields from a fixed frame of reference. Without a loss of generality, since the chosen equations are linear, only a mode-1 wave will be considered, corresponding to the smallest wave number possible. Following the stratified waveguide analogy (see Sect. <xref ref-type="sec" rid="Ch1.S3.SS1"/>) and multiplying the result by an arbitrary scaling factor <inline-formula><mml:math id="M109" display="inline"><mml:mi>A</mml:mi></mml:math></inline-formula>, which is effectively a measure of wave amplitude, the resulting <inline-formula><mml:math id="M110" display="inline"><mml:mrow><mml:msub><mml:mi>w</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> perturbation is
            <disp-formula id="Ch1.E22" content-type="numbered"><label>22</label><mml:math id="M111" display="block"><mml:mrow><mml:msub><mml:mi>w</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mi>A</mml:mi><mml:mi>k</mml:mi><mml:mi>cos⁡</mml:mi><mml:mo>(</mml:mo><mml:mi>k</mml:mi><mml:mi>x</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">ω</mml:mi><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d2e2798">Using continuity, Eq. (<xref ref-type="disp-formula" rid="Ch1.E21"/>), an expression for <inline-formula><mml:math id="M112" display="inline"><mml:mrow><mml:msub><mml:mi>u</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is derived accordingly:
            <disp-formula id="Ch1.E23" content-type="numbered"><label>23</label><mml:math id="M113" display="block"><mml:mrow><mml:msub><mml:mi>u</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mi>A</mml:mi><mml:mi>sin⁡</mml:mi><mml:mo>(</mml:mo><mml:mi>k</mml:mi><mml:mi>x</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">ω</mml:mi><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mi>W</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d2e2873">Further appealing to the linearized form of the advection–diffusion equation, Eq. (<xref ref-type="disp-formula" rid="Ch1.E20"/>), the density perturbation, <inline-formula><mml:math id="M114" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="italic">ρ</mml:mi><mml:mi mathvariant="normal">E</mml:mi><mml:mo>′</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, is then
            <disp-formula id="Ch1.E24" content-type="numbered"><label>24</label><mml:math id="M115" display="block"><mml:mrow><mml:msubsup><mml:mi mathvariant="italic">ρ</mml:mi><mml:mi mathvariant="normal">E</mml:mi><mml:mo>′</mml:mo></mml:msubsup><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mover accent="true"><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>A</mml:mi><mml:mi>k</mml:mi></mml:mrow><mml:mi mathvariant="italic">ω</mml:mi></mml:mfrac></mml:mstyle><mml:mi>sin⁡</mml:mi><mml:mo>(</mml:mo><mml:mi>k</mml:mi><mml:mi>x</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">ω</mml:mi><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mi>W</mml:mi><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d2e2967">The result of the above derivation is a field <inline-formula><mml:math id="M116" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:msub><mml:mi>u</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:msub><mml:mi>w</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:msubsup><mml:mi mathvariant="italic">ρ</mml:mi><mml:mi mathvariant="normal">E</mml:mi><mml:mo>′</mml:mo></mml:msubsup><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, shown in Fig. <xref ref-type="fig" rid="Ch1.F3"/>a and b at an arbitrary time of a propagating internal-wave solution of the linear Euler equations under the Boussinesq approximation. The approximate fields are two-dimensional in space, <inline-formula><mml:math id="M117" display="inline"><mml:mrow><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:math></inline-formula>, and also depend on time <inline-formula><mml:math id="M118" display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula>. They exhibit a separable structure in <inline-formula><mml:math id="M119" display="inline"><mml:mrow><mml:mi>x</mml:mi><mml:mo>-</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:math></inline-formula> and the vertical direction, <inline-formula><mml:math id="M120" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula>.</p>

      <fig id="Ch1.F3" specific-use="star"><label>Figure 3</label><caption><p id="d2e3044">Snapshots of the velocity fields over one wavelength in the Eulerian approach <bold>(a, b)</bold> and in the Euler–Lagrange approach <bold>(c, d)</bold> at an arbitrary time <inline-formula><mml:math id="M121" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula> to highlight the spatial waveform. Panel <bold>(e)</bold> presents the corresponding wave vertical structures at different locations represented as vertical lines in panels <bold>(a)</bold> and <bold>(c)</bold>. The displaced pycnocline is represented as a black line. Velocities are normalized with their maximum values.</p></caption>
          <graphic xlink:href="https://npg.copernicus.org/articles/31/515/2024/npg-31-515-2024-f03.png"/>

        </fig>

      <p id="d2e3081">In practice, the approximations are implemented through a Dirichlet boundary condition (see Eqs. <xref ref-type="disp-formula" rid="Ch1.E7"/> and <xref ref-type="disp-formula" rid="Ch1.E8"/>) along a vertical boundary, which we assume to occur at <inline-formula><mml:math id="M122" display="inline"><mml:mrow><mml:mi>x</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula>, without any loss of generality.</p>
      <p id="d2e3100">As a result, the deep-water boundary forcing functions for the Eulerian approach are defined as follows:

                <disp-formula specific-use="gather" content-type="numbered"><mml:math id="M123" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E25"><mml:mtd><mml:mtext>25</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msubsup><mml:mi>f</mml:mi><mml:mi>u</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msubsup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mi>A</mml:mi><mml:mi>sin⁡</mml:mi><mml:mo>(</mml:mo><mml:mo>-</mml:mo><mml:mi mathvariant="italic">ω</mml:mi><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mi>W</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E26"><mml:mtd><mml:mtext>26</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msubsup><mml:mi>f</mml:mi><mml:mi>w</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msubsup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mi>A</mml:mi><mml:mi>k</mml:mi><mml:mi>cos⁡</mml:mi><mml:mo>(</mml:mo><mml:mo>-</mml:mo><mml:mi mathvariant="italic">ω</mml:mi><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E27"><mml:mtd><mml:mtext>27</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msubsup><mml:mi>f</mml:mi><mml:mi mathvariant="italic">ρ</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msubsup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mover accent="true"><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>A</mml:mi><mml:mi>k</mml:mi></mml:mrow><mml:mi mathvariant="italic">ω</mml:mi></mml:mfrac></mml:mstyle><mml:mi>sin⁡</mml:mi><mml:mo>(</mml:mo><mml:mo>-</mml:mo><mml:mi mathvariant="italic">ω</mml:mi><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mi>W</mml:mi><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula></p>
</sec>
<sec id="Ch1.S3.SS3">
  <label>3.3</label><title>Euler–Lagrange approach</title>
      <p id="d2e3295">When the Eulerian approach in Sect. <xref ref-type="sec" rid="Ch1.S3.SS2"/> is applied to situations with a sharp pycnocline, a consistent error is observed for all but the smallest and shortest waves (see Sect. <xref ref-type="sec" rid="Ch1.S3.SS4.SSS2"/>). This disintegration of the generated wave is due to the fact that the up-and-down motion of the pycnocline is not accounted for in the vertical mode description. A natural way to account for this motion is achieved by introducing the wave-induced displacement of the pycnocline. This is measured by the vertical displacement <inline-formula><mml:math id="M124" display="inline"><mml:mrow><mml:mi mathvariant="italic">η</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> of the isopycnals (Fig. <xref ref-type="fig" rid="Ch1.F2"/>), or isopycnal displacement. Such an approach is labeled as partially Lagrangian since it follows the vertical displacement of individual fluid parcels through time. When combined with the usual description in the horizontal, it is labeled as an Euler–Lagrange approach <xref ref-type="bibr" rid="bib1.bibx17 bib1.bibx55" id="paren.44"/>.</p>
      <p id="d2e3329">Introducing the vertical displacement <inline-formula><mml:math id="M125" display="inline"><mml:mrow><mml:mi mathvariant="italic">η</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> of the isopycnals allows for a different, more natural description of the perturbed stratification. Specifically, neglecting the uniform background density, <inline-formula><mml:math id="M126" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, for the sake of compactness, the wave-induced density field can be alternatively expressed as follows:
            <disp-formula id="Ch1.E28" content-type="numbered"><label>28</label><mml:math id="M127" display="block"><mml:mrow><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo>(</mml:mo><mml:mi mathvariant="bold-italic">x</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mover accent="true"><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          which signifies that the density at a point is the same as that at an appropriate height far upstream. The density perturbation, <inline-formula><mml:math id="M128" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="italic">ρ</mml:mi><mml:mtext>E-L</mml:mtext><mml:mo>′</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>, can also be rewritten as follows:
            <disp-formula id="Ch1.E29" content-type="numbered"><label>29</label><mml:math id="M129" display="block"><mml:mrow><mml:msubsup><mml:mi mathvariant="italic">ρ</mml:mi><mml:mtext>E-L</mml:mtext><mml:mo>′</mml:mo></mml:msubsup><mml:mo>=</mml:mo><mml:mover accent="true"><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mfenced open="(" close=")"><mml:mrow><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d2e3486">Taylor-expanding the right hand side shows that <inline-formula><mml:math id="M130" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="italic">ρ</mml:mi><mml:mtext>E-L</mml:mtext><mml:mo>′</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> is a polynomial in <inline-formula><mml:math id="M131" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>, with the classical Eulerian description giving only the first term:
            <disp-formula id="Ch1.E30" content-type="numbered"><label>30</label><mml:math id="M132" display="block"><mml:mrow><mml:msubsup><mml:mi mathvariant="italic">ρ</mml:mi><mml:mtext>E-L</mml:mtext><mml:mo>′</mml:mo></mml:msubsup><mml:mo>≈</mml:mo><mml:mo>-</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mover accent="true"><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi mathvariant="normal">d</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mover accent="true"><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover></mml:mrow><mml:mrow><mml:mi mathvariant="normal">d</mml:mi><mml:msup><mml:mi>z</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:msup><mml:mi mathvariant="italic">η</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d2e3578">By effectively keeping more terms in the expansion, the efficacy of the deep-water forcing is significantly improved.  The first term carries a structure representative of the Eulerian approach in Eq. (<xref ref-type="disp-formula" rid="Ch1.E24"/>). However, from the second derivative of the background density profile in the second term, we can see that Euler–Lagrange effects can be expected to be important for finite-amplitude waves when the stratification exhibits a sharp pycnocline. Such is exactly the case for the study at hand and the continuous two-layer stratification it uses (see Fig. <xref ref-type="fig" rid="Ch1.F1"/> and Sect. <xref ref-type="sec" rid="Ch1.S3.SS4.SSS1"/>).</p>
      <p id="d2e3588">At this juncture, it is worth emphasizing that the inclusion of the second term in the Taylor expansion of Eq. (<xref ref-type="disp-formula" rid="Ch1.E30"/>) still only provides an approximate solution of the governing equations (both the linear and non-linear Euler equations) for the input wave field. The purpose of this study is not to provide an exact solution in this context, particularly in a non-linear sense, as enabled, e.g., by the internal-solitary-wave-generating algorithm of <xref ref-type="bibr" rid="bib1.bibx55" id="text.45"/> as it was implemented in  <xref ref-type="bibr" rid="bib1.bibx13" id="text.46"/>. Instead, as is subsequently demonstrated, we are aiming for an approximate solution of the linear Euler equations that will drive the deep-water boundary forcing of finite-amplitude waves in a fully non-linear simulation such that the waves can remain robust both near the source and further along the propagation path when non-linear effects modify their waveform.</p>
      <p id="d2e3599">For the quasi two-layer continuous stratification case, an order-of-magnitude comparison between the two terms on the right-hand side of Eq. (<xref ref-type="disp-formula" rid="Ch1.E30"/>) may be obtained if one uses as  characteristic density and length scales the density jump, <inline-formula><mml:math id="M133" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="italic">ρ</mml:mi></mml:mrow></mml:math></inline-formula>, across the pycnocline and the pycnocline thickness, <inline-formula><mml:math id="M134" display="inline"><mml:mi mathvariant="italic">δ</mml:mi></mml:math></inline-formula>. Per Eqs. (<xref ref-type="disp-formula" rid="Ch1.E34"/>) and (<xref ref-type="disp-formula" rid="Ch1.E40"/>), as outlined in the next two sections, one may further write out the isopycnal displacement function as follows:
            <disp-formula id="Ch1.E31" content-type="numbered"><label>31</label><mml:math id="M135" display="block"><mml:mrow><mml:mi mathvariant="italic">η</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mi>A</mml:mi><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi>k</mml:mi><mml:mi mathvariant="italic">ω</mml:mi></mml:mfrac></mml:mstyle><mml:mi>r</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
          where <inline-formula><mml:math id="M136" display="inline"><mml:mi>A</mml:mi></mml:math></inline-formula> is the previously introduced amplitude factor and <inline-formula><mml:math id="M137" display="inline"><mml:mrow><mml:mi>r</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is a structure function, harmonic in <inline-formula><mml:math id="M138" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M139" display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula> and determined by the eigenfunction <inline-formula><mml:math id="M140" display="inline"><mml:mrow><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> in the vertical, which assumes values in the range <inline-formula><mml:math id="M141" display="inline"><mml:mrow><mml:mo>[</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>. Using the characteristic scales above and Eq. (<xref ref-type="disp-formula" rid="Ch1.E31"/>), one can show that the ratio of the magnitude of the second term to that of the first one on the right-hand side of Eq. (<xref ref-type="disp-formula" rid="Ch1.E30"/>) scales as <inline-formula><mml:math id="M142" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:mi>A</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="italic">δ</mml:mi><mml:mo>)</mml:mo><mml:mo>(</mml:mo><mml:mi>k</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>)</mml:mo><mml:mi>r</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. Therefore, the strength of the Euler–Lagrange effects becomes important when the parameter <inline-formula><mml:math id="M143" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:mi>A</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="italic">δ</mml:mi><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>(</mml:mo><mml:mi>k</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mi>A</mml:mi><mml:mo>/</mml:mo><mml:mo>(</mml:mo><mml:mi mathvariant="italic">δ</mml:mi><mml:mi>c</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is sufficiently larger than unity; here, <inline-formula><mml:math id="M144" display="inline"><mml:mrow><mml:mi>c</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">ω</mml:mi><mml:mo>/</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:math></inline-formula> is the linear-phase speed obtained by solving the eigenvalue problem outlined in Sect. <xref ref-type="sec" rid="Ch1.S3.SS1"/>. The particular condition is satisfied for high wave amplitudes, small pycnocline thickness and slow wave propagation speeds.</p>
      <p id="d2e3863">Restricting the scope to vertical mode-1 waves if <inline-formula><mml:math id="M145" display="inline"><mml:mrow><mml:mi>A</mml:mi><mml:mo>/</mml:mo><mml:mo>(</mml:mo><mml:mi mathvariant="italic">δ</mml:mi><mml:mi>c</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is sufficiently larger than unity; Euler–Lagrange effects also become important when the structure function <inline-formula><mml:math id="M146" display="inline"><mml:mrow><mml:mi>r</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is <inline-formula><mml:math id="M147" display="inline"><mml:mrow><mml:mi>O</mml:mi><mml:mo>(</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> over a long enough horizontal length scale. For very long waves, <inline-formula><mml:math id="M148" display="inline"><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>/</mml:mo><mml:mi>H</mml:mi><mml:mo>≫</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>, this is the case over effectively the entire wavelength, and <inline-formula><mml:math id="M149" display="inline"><mml:mrow><mml:mi>r</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mi>r</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. For a wave with finite horizontal wavelength, <inline-formula><mml:math id="M150" display="inline"><mml:mi mathvariant="italic">λ</mml:mi></mml:math></inline-formula>, which is a finite multiple of the water depth (<inline-formula><mml:math id="M151" display="inline"><mml:mi>H</mml:mi></mml:math></inline-formula>), the along-wave variation in <inline-formula><mml:math id="M152" display="inline"><mml:mrow><mml:mi>r</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> needs to be retained. These two properties of the horizontal structure of <inline-formula><mml:math id="M153" display="inline"><mml:mrow><mml:mi>r</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> are at the crux of the formulations outlined in the next two sections.</p>
      <p id="d2e4032">Inserting the density perturbation, Eq. (<xref ref-type="disp-formula" rid="Ch1.E29"/>), into Eq. (<xref ref-type="disp-formula" rid="Ch1.E20"/>), a definition analogous to the free-surface kinematic boundary condition <xref ref-type="bibr" rid="bib1.bibx22" id="paren.47"/> arises for the isopycnal displacement, <inline-formula><mml:math id="M154" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>:
            <disp-formula id="Ch1.E32" content-type="numbered"><label>32</label><mml:math id="M155" display="block"><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>D</mml:mi><mml:mi mathvariant="italic">η</mml:mi></mml:mrow><mml:mrow><mml:mi>D</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>=</mml:mo><mml:mi>w</mml:mi><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d2e4072">When deriving the actual velocity field using the Euler–Lagrange approach, the stratified waveguide analogy is still valid, but with a time-dependent stratification to account for the wave-induced changes to justify the dynamic nature of the pycnocline. The derivation is the same as above, only replacing the fixed frame of reference by the one tracking the displaced pycnocline. The decomposition presented in Eq. (<xref ref-type="disp-formula" rid="Ch1.E15"/>) is still valid as the change in the frame of reference considered only involves a vertical translation in <inline-formula><mml:math id="M156" display="inline"><mml:mi>W</mml:mi></mml:math></inline-formula>. Therefore, the vertical velocity <inline-formula><mml:math id="M157" display="inline"><mml:mrow><mml:msub><mml:mi>w</mml:mi><mml:mtext>E-L</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is now actually given by

                <disp-formula id="Ch1.E33" content-type="numbered"><label>33</label><mml:math id="M158" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mtable rowspacing="0.2ex" columnspacing="1em" class="aligned" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mi>w</mml:mi><mml:mtext>E-L</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mo>=</mml:mo><mml:msub><mml:mi>w</mml:mi><mml:mtext>Eul</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mi>A</mml:mi><mml:mi>k</mml:mi><mml:mi>cos⁡</mml:mi><mml:mo>(</mml:mo><mml:mi>k</mml:mi><mml:mi>x</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">ω</mml:mi><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:math></disp-formula>

          Note that in Eqs. (<xref ref-type="disp-formula" rid="Ch1.E29"/>) and (<xref ref-type="disp-formula" rid="Ch1.E33"/>), <inline-formula><mml:math id="M159" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula> is defined using Eqs. (<xref ref-type="disp-formula" rid="Ch1.E34"/>) or (<xref ref-type="disp-formula" rid="Ch1.E40"/>), as elaborated in Sect. <xref ref-type="sec" rid="Ch1.S3.SS3.SSS1"/> and <xref ref-type="sec" rid="Ch1.S3.SS3.SSS2"/>.</p>
<sec id="Ch1.S3.SS3.SSS1">
  <label>3.3.1</label><title>Long waves</title>
      <p id="d2e4227">As a first approximation, since the  waves of interest are long (<inline-formula><mml:math id="M160" display="inline"><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>/</mml:mo><mml:mi>H</mml:mi><mml:mo>≫</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>) and as outlined in the previous section, the <inline-formula><mml:math id="M161" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> dependence of the vertical displacement, <inline-formula><mml:math id="M162" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>, is neglected and <inline-formula><mml:math id="M163" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula> is considered to depend only on the vertical position <inline-formula><mml:math id="M164" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> and time <inline-formula><mml:math id="M165" display="inline"><mml:mi>t</mml:mi></mml:math></inline-formula>. The displacement of the fluid in the vertical direction along the wall, <inline-formula><mml:math id="M166" display="inline"><mml:mrow><mml:mi mathvariant="italic">η</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, is therefore computed by integrating in time the <inline-formula><mml:math id="M167" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> component of the velocity field in time. The Eulerian approach discussed previously then gives a good approximation, as a starting point, of the <inline-formula><mml:math id="M168" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> field (Eq. <xref ref-type="disp-formula" rid="Ch1.E22"/>), and <inline-formula><mml:math id="M169" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula> may be derived as follows:
              <disp-formula id="Ch1.E34" content-type="numbered"><label>34</label><mml:math id="M170" display="block"><mml:mrow><mml:mi mathvariant="italic">η</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:munderover><mml:mo movablelimits="false">∫</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mi>t</mml:mi></mml:munderover><mml:msub><mml:mi>w</mml:mi><mml:mi mathvariant="normal">E</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mi mathvariant="normal">d</mml:mi><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>A</mml:mi><mml:mi>k</mml:mi></mml:mrow><mml:mi mathvariant="italic">ω</mml:mi></mml:mfrac></mml:mstyle><mml:mi>sin⁡</mml:mi><mml:mo>(</mml:mo><mml:mo>-</mml:mo><mml:mi mathvariant="italic">ω</mml:mi><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d2e4420">Using the continuity equation, Eq. (<xref ref-type="disp-formula" rid="Ch1.E21"/>), <inline-formula><mml:math id="M171" display="inline"><mml:mrow><mml:msub><mml:mi>u</mml:mi><mml:mtext>E-L</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is derived accordingly. Specific attention needs to be paid to the <inline-formula><mml:math id="M172" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> variation in the pycnocline's displacement, <inline-formula><mml:math id="M173" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>. In this regard, using the chain rule in differentiating <inline-formula><mml:math id="M174" display="inline"><mml:mrow><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, one obtains

                  <disp-formula id="Ch1.E35" content-type="numbered"><label>35</label><mml:math id="M175" display="block"><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mtable columnspacing="1em" class="aligned" rowspacing="0.2ex" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>u</mml:mi><mml:mtext>E-L</mml:mtext></mml:msub></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>x</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:msub><mml:mi>w</mml:mi><mml:mtext>E-L</mml:mtext></mml:msub></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mo>=</mml:mo><mml:mi>A</mml:mi><mml:mi>k</mml:mi><mml:mi>cos⁡</mml:mi><mml:mo>(</mml:mo><mml:mi>k</mml:mi><mml:mi>x</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">ω</mml:mi><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:msup><mml:mi>W</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:math></disp-formula>

            leading to
              <disp-formula id="Ch1.E36" content-type="numbered"><label>36</label><mml:math id="M176" display="block"><mml:mrow><mml:msub><mml:mi>u</mml:mi><mml:mtext>E-L</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:mi>A</mml:mi><mml:mi>sin⁡</mml:mi><mml:mo>(</mml:mo><mml:mi>k</mml:mi><mml:mi>x</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">ω</mml:mi><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mfenced open="(" close=")"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:msup><mml:mi>W</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d2e4647">An extra term depending on the <inline-formula><mml:math id="M177" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> dependence of <inline-formula><mml:math id="M178" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula> now appears in the expression of <inline-formula><mml:math id="M179" display="inline"><mml:mrow><mml:msub><mml:mi>u</mml:mi><mml:mtext>E-L</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> to account for the movement of the pycnocline in contrast with Eq. (<xref ref-type="disp-formula" rid="Ch1.E23"/>). Note also that the prime denotes a derivative with respect to the argument of <inline-formula><mml:math id="M180" display="inline"><mml:mi>W</mml:mi></mml:math></inline-formula>.</p>
      <p id="d2e4684">As a result, the deep-water boundary forcing functions for the Euler–Lagrange approach are defined as

                  <disp-formula specific-use="gather" content-type="numbered"><mml:math id="M181" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E37"><mml:mtd><mml:mtext>37</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msubsup><mml:mi>f</mml:mi><mml:mi>u</mml:mi><mml:mtext>E-L</mml:mtext></mml:msubsup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mi>A</mml:mi><mml:mi>sin⁡</mml:mi><mml:mo>(</mml:mo><mml:mo>-</mml:mo><mml:mi mathvariant="italic">ω</mml:mi><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:msup><mml:mi>W</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E38"><mml:mtd><mml:mtext>38</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msubsup><mml:mi>f</mml:mi><mml:mi>w</mml:mi><mml:mtext>E-L</mml:mtext></mml:msubsup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mi>A</mml:mi><mml:mi>k</mml:mi><mml:mi>cos⁡</mml:mi><mml:mo>(</mml:mo><mml:mo>-</mml:mo><mml:mi mathvariant="italic">ω</mml:mi><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E39"><mml:mtd><mml:mtext>39</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msubsup><mml:mi>f</mml:mi><mml:mi mathvariant="italic">ρ</mml:mi><mml:mtext>E-L</mml:mtext></mml:msubsup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mover accent="true"><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mfenced close=")" open="("><mml:mrow><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula></p>
      <p id="d2e4885">By comparing the spatial structure of the two approaches (Fig. <xref ref-type="fig" rid="Ch1.F3"/>), the main difference resides in the structure of the velocity fields: in the Euler–Lagrange approach, the velocity field's deformation tracks that of the pycnocline (plotted in black in Fig. <xref ref-type="fig" rid="Ch1.F3"/>c and d) in contrast to the purely Eulerian case where the velocity field treats the pycnocline's position as constant (Fig. <xref ref-type="fig" rid="Ch1.F3"/>a and b). Panel (e) shows how the vertical eigenfunctions computed for the wave-displaced pycnocline at the wave peak and trough are offset from the corresponding eigenfunction computed for the initial undisturbed stratification. In the Euler–Lagrange approach, this vertical wave-induced pycnocline displacement is indeed accounted for. For a more detailed discussion of modified vertical eigenfunctions due to wave-induced displacements of the pycnocline and a more thorough mathematical elaboration thereof, the interested reader is referred to the paper by <xref ref-type="bibr" rid="bib1.bibx28" id="text.48"/>.</p>
</sec>
<sec id="Ch1.S3.SS3.SSS2">
  <label>3.3.2</label><title>Waves of finite wavelength</title>
      <p id="d2e4906">So far, the dependence of <inline-formula><mml:math id="M182" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula> on the along-wave position <inline-formula><mml:math id="M183" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> has been neglected in a first approximation since the considered waves are assumed to be long. Practically, numerical simulations are often required to consider waves of finite wavelength. In this case, to accurately satisfy the continuity equation, Eq. (<xref ref-type="disp-formula" rid="Ch1.E21"/>), the <inline-formula><mml:math id="M184" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> dependence must be accounted for and the displacement, <inline-formula><mml:math id="M185" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>, is expressed as follows:

                  <disp-formula id="Ch1.E40" content-type="numbered"><label>40</label><mml:math id="M186" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mtable rowspacing="0.2ex" columnspacing="1em" class="aligned" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi mathvariant="italic">η</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mo>=</mml:mo><mml:msubsup><mml:mo movablelimits="false">∫</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mi>t</mml:mi></mml:msubsup><mml:msub><mml:mi>w</mml:mi><mml:mtext>Eul</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mi mathvariant="normal">d</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>A</mml:mi><mml:mi>k</mml:mi></mml:mrow><mml:mi mathvariant="italic">ω</mml:mi></mml:mfrac></mml:mstyle><mml:mi>sin⁡</mml:mi><mml:mo>(</mml:mo><mml:mi>k</mml:mi><mml:mi>x</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">ω</mml:mi><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:math></disp-formula></p>
      <p id="d2e5047">Integrating Eq. (<xref ref-type="disp-formula" rid="Ch1.E35"/>) now needs to take into account the <inline-formula><mml:math id="M187" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> dependence of <inline-formula><mml:math id="M188" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>, leading to a new expression for the horizontal velocity perturbation:

                  <disp-formula id="Ch1.E41" content-type="numbered"><label>41</label><mml:math id="M189" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mtable rowspacing="0.2ex" columnspacing="1em" class="aligned" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mi>u</mml:mi><mml:mtext>E-L</mml:mtext></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi mathvariant="italic">ω</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>+</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="italic">ω</mml:mi><mml:msup><mml:mi>W</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:mi>k</mml:mi><mml:msup><mml:mi>W</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfrac></mml:mstyle><mml:mi mathvariant="normal">Φ</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo><mml:mo>+</mml:mo><mml:mi>B</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:math></disp-formula>

            where <inline-formula><mml:math id="M190" display="inline"><mml:mi mathvariant="normal">Φ</mml:mi></mml:math></inline-formula> is the antiderivative of <inline-formula><mml:math id="M191" display="inline"><mml:mi>W</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M192" display="inline"><mml:mi>B</mml:mi></mml:math></inline-formula> is an integration constant. The second term on the right-hand side of Eq. (<xref ref-type="disp-formula" rid="Ch1.E41"/>) appears to be, by evaluation of terms across the height of the domain, orders of magnitude smaller than the first one for a typically used wave and is therefore dropped:
              <disp-formula id="Ch1.E42" content-type="numbered"><label>42</label><mml:math id="M193" display="block"><mml:mrow><mml:msub><mml:mi>u</mml:mi><mml:mtext>E-L</mml:mtext></mml:msub><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi mathvariant="italic">ω</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo><mml:mo>+</mml:mo><mml:mi>B</mml:mi><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d2e5282"><inline-formula><mml:math id="M194" display="inline"><mml:mi>B</mml:mi></mml:math></inline-formula> can be derived from the fact that the horizontal velocity is zero at the depth of the pycnocline, leading to

                  <disp-formula id="Ch1.E43" content-type="numbered"><label>43</label><mml:math id="M195" display="block"><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mtable columnspacing="1em" class="aligned" rowspacing="0.2ex" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi>B</mml:mi><mml:mo>=</mml:mo></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi mathvariant="italic">ω</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">p</mml:mi></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>(</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">p</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>)</mml:mo></mml:mrow></mml:mfenced></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>×</mml:mo><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">p</mml:mi></mml:msub><mml:mo>-</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>(</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">p</mml:mi></mml:msub><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>)</mml:mo><mml:mo>)</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:math></disp-formula></p>
      <p id="d2e5413">Since the right-hand side of Eq. (<xref ref-type="disp-formula" rid="Ch1.E42"/>) is not defined on the boundaries for <inline-formula><mml:math id="M196" display="inline"><mml:mrow><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M197" display="inline"><mml:mrow><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mi>H</mml:mi></mml:mrow></mml:math></inline-formula>, it can be extended using a continuous linear extension, finally resulting in

                  <disp-formula id="Ch1.E44" content-type="numbered"><label>44</label><mml:math id="M198" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mtable class="aligned" columnspacing="1em" rowspacing="0.2ex" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msub><mml:mi>u</mml:mi><mml:mtext>E-L</mml:mtext></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mfenced open="{" close=""><mml:mtable columnspacing="1em" class="cases" rowspacing="7pt 7pt" columnalign="left left" framespacing="0em"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi mathvariant="italic">ω</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced open="(" close=")"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo><mml:mo>+</mml:mo><mml:mi>B</mml:mi></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mtext>for </mml:mtext><mml:mn mathvariant="normal">0</mml:mn><mml:mo>&gt;</mml:mo><mml:mi>z</mml:mi><mml:mo>&gt;</mml:mo><mml:mo>-</mml:mo><mml:mi>H</mml:mi></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi mathvariant="italic">ω</mml:mi><mml:mi>k</mml:mi></mml:mfrac></mml:mstyle><mml:mfenced open="(" close=")"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>(</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:mi>B</mml:mi></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mtext>for </mml:mtext><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi mathvariant="italic">ω</mml:mi><mml:mi>k</mml:mi></mml:mfrac></mml:mstyle><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>(</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo><mml:mo>-</mml:mo><mml:mi>H</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:mi>B</mml:mi></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mtext>for </mml:mtext><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mi>H</mml:mi></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:math></disp-formula>

            This approach is hereafter referred to as “optimized Euler–Lagrange”.</p>
      <p id="d2e5669">Note that, when used to implement deep-water wave-generating boundary conditions, in all final expressions for <inline-formula><mml:math id="M199" display="inline"><mml:mrow><mml:msub><mml:mi>u</mml:mi><mml:mtext>E-L</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M200" display="inline"><mml:mrow><mml:msub><mml:mi>w</mml:mi><mml:mtext>E-L</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M201" display="inline"><mml:mrow><mml:msubsup><mml:mi mathvariant="italic">ρ</mml:mi><mml:mtext>E-L</mml:mtext><mml:mo>′</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula> derived in this section or Sect. <xref ref-type="sec" rid="Ch1.S3.SS3.SSS1"/>, the value of <inline-formula><mml:math id="M202" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> is set to zero without any loss of generality in a manner similar to the Eulerian approach as discussed in Sect. <xref ref-type="sec" rid="Ch1.S3.SS2"/>.</p>
      <p id="d2e5719">As a result, the deep-water boundary forcing functions for the optimized Euler–Lagrange approach are defined as follows:

                  <disp-formula specific-use="gather" content-type="numbered"><mml:math id="M203" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E45"><mml:mtd><mml:mtext>45</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mtable rowspacing="0.2ex" class="aligned" columnspacing="1em" displaystyle="true" columnalign="right left"><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msubsup><mml:mi>f</mml:mi><mml:mi>u</mml:mi><mml:mtext>optimized E-L</mml:mtext></mml:msubsup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mfenced open="{" close=""><mml:mtable rowspacing="7pt 7pt" class="cases" columnspacing="1em" columnalign="left left" framespacing="0em"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi mathvariant="italic">ω</mml:mi><mml:mrow><mml:mi>k</mml:mi><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfrac></mml:mstyle><mml:mfenced open="(" close=")"><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo><mml:mo>+</mml:mo><mml:mi>B</mml:mi></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mtext>for </mml:mtext><mml:mn mathvariant="normal">0</mml:mn><mml:mo>&gt;</mml:mo><mml:mi>z</mml:mi><mml:mo>&gt;</mml:mo><mml:mo>-</mml:mo><mml:mi>H</mml:mi></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi mathvariant="italic">ω</mml:mi><mml:mi>k</mml:mi></mml:mfrac></mml:mstyle><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>(</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:mi>B</mml:mi></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mtext>for </mml:mtext><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi mathvariant="italic">ω</mml:mi><mml:mi>k</mml:mi></mml:mfrac></mml:mstyle><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow><mml:mrow><mml:mo>∂</mml:mo><mml:mi>z</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>(</mml:mo><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo><mml:mo>-</mml:mo><mml:mi>H</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:mi>B</mml:mi></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mtext>for </mml:mtext><mml:mi>z</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mi>H</mml:mi></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E46"><mml:mtd><mml:mtext>46</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msubsup><mml:mi>f</mml:mi><mml:mi>w</mml:mi><mml:mtext>optimized E-L</mml:mtext></mml:msubsup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mi>A</mml:mi><mml:mi>k</mml:mi><mml:mi>cos⁡</mml:mi><mml:mo>(</mml:mo><mml:mo>-</mml:mo><mml:mi mathvariant="italic">ω</mml:mi><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E47"><mml:mtd><mml:mtext>47</mml:mtext></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msubsup><mml:mi>f</mml:mi><mml:mi mathvariant="italic">ρ</mml:mi><mml:mtext>optimized E-L</mml:mtext></mml:msubsup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mover accent="true"><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mfenced close=")" open="("><mml:mrow><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">η</mml:mi></mml:mrow></mml:mfenced><mml:mo>-</mml:mo><mml:mover accent="true"><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula></p>
      <p id="d2e6068">The associated adjustments introduced in the pressure boundary condition due to the presence of a time-dependent boundary-normal velocity field at the deep-water boundary are discussed in Sect. <xref ref-type="sec" rid="Ch1.S2.SS4"/>.</p>
      <p id="d2e6073">Finally, per the previous discussion of Eq. (<xref ref-type="disp-formula" rid="Ch1.E30"/>), we emphasize that, by construction, neither of the outlined variants of the Euler–Lagrange approach are designed as exact solutions to the linearized Euler equations: perfectly shaped monochromatic waves should not be expected.  As illustrated by the results in Sect. <xref ref-type="sec" rid="Ch1.S3.SS4.SSS3"/>, the waves generated through the most suitable of the two Euler–Lagrange approaches (dictated by the aspect ratio <inline-formula><mml:math id="M204" display="inline"><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>/</mml:mo><mml:mi>H</mml:mi></mml:mrow></mml:math></inline-formula> at hand) are far more robust than those produced by the purely Eulerian approach. As a result, higher-amplitude longer waves can be used as forcing of fully non-linear simulations (see Sect. <xref ref-type="sec" rid="Ch1.S3.SS4.SSS4"/>).</p>
</sec>
</sec>
<sec id="Ch1.S3.SS4">
  <label>3.4</label><title>Simulations of periodic internal waves in uniform-depth water</title>
<sec id="Ch1.S3.SS4.SSS1">
  <label>3.4.1</label><title>Numerical setup</title>
      <p id="d2e6111">Across all numerical simulations conducted in this study, the wave-based Reynolds number is held constant at <inline-formula><mml:math id="M205" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">Re</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2.5</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mn mathvariant="normal">5</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>. Such a value of <inline-formula><mml:math id="M206" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">Re</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is representative of the laboratory scale yet is sufficiently high to avoid any attenuation in wave amplitude in the propagation zone. The Schmidt number, <inline-formula><mml:math id="M207" display="inline"><mml:mrow><mml:mi mathvariant="italic">Sc</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="italic">ν</mml:mi><mml:mo>/</mml:mo><mml:mi mathvariant="italic">κ</mml:mi></mml:mrow></mml:math></inline-formula>, is fixed at unity.   A wave-based Froude number of <inline-formula><mml:math id="M208" display="inline"><mml:mrow><mml:mi mathvariant="italic">Fr</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.2</mml:mn></mml:mrow></mml:math></inline-formula> is linked to generated waves that may confidently be characterized as finite-amplitude and  can support the development of sufficiently strong non-linear effects as they propagate away from the forcing boundary.</p>
      <p id="d2e6175">The quasi two-layer continuous stratification profile for <inline-formula><mml:math id="M209" display="inline"><mml:mrow><mml:mover accent="true"><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo mathvariant="normal">‾</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, given by Eq. (<xref ref-type="disp-formula" rid="Ch1.E3"/>), is kept the same across all runs. A relatively thin pycnocline with <inline-formula><mml:math id="M210" display="inline"><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mo>/</mml:mo><mml:mi>H</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.09</mml:mn></mml:mrow></mml:math></inline-formula> is used, with a non-dimensional density jump across the pycnocline of <inline-formula><mml:math id="M211" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo>/</mml:mo><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:msubsup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">0</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mi mathvariant="italic">δ</mml:mi><mml:mo>/</mml:mo><mml:mi>g</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1.7</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula> located at relative position <inline-formula><mml:math id="M212" display="inline"><mml:mrow><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">p</mml:mi></mml:msub><mml:mo>/</mml:mo><mml:mi>H</mml:mi><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.4</mml:mn></mml:mrow></mml:math></inline-formula>. The particular value of <inline-formula><mml:math id="M213" display="inline"><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mo>/</mml:mo><mml:mi>H</mml:mi></mml:mrow></mml:math></inline-formula> is chosen to mimic the thinner pycnocline of the early fall stratification profile in a long deep lake <xref ref-type="bibr" rid="bib1.bibx47" id="paren.49"/>. The deep-water-generated wave used in these simulations is chosen to have an aspect ratio of <inline-formula><mml:math id="M214" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:mo>/</mml:mo><mml:mi>H</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">10.12</mml:mn></mml:mrow></mml:math></inline-formula>. Such a value of <inline-formula><mml:math id="M215" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:mo>/</mml:mo><mml:mi>H</mml:mi></mml:mrow></mml:math></inline-formula> qualifies the wave as finite-length, albeit not short.  Finally,  for the  particular thin-pycnocline stratification profile and choice of <inline-formula><mml:math id="M216" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>,   the amplitude coefficient <inline-formula><mml:math id="M217" display="inline"><mml:mi>A</mml:mi></mml:math></inline-formula> leading to a value of <inline-formula><mml:math id="M218" display="inline"><mml:mrow><mml:mi mathvariant="italic">Fr</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.2</mml:mn></mml:mrow></mml:math></inline-formula>  corresponds to a value of <inline-formula><mml:math id="M219" display="inline"><mml:mrow><mml:mi>A</mml:mi><mml:mo>/</mml:mo><mml:mo>(</mml:mo><mml:mi mathvariant="italic">δ</mml:mi><mml:mi>c</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula>.  Euler–Lagrange effects will clearly be present. The choice of <inline-formula><mml:math id="M220" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:mo>/</mml:mo><mml:mi>H</mml:mi></mml:mrow></mml:math></inline-formula> further motivates the question as to whether the fully optimized Euler–Lagrange approach is needed.</p>
      <p id="d2e6401">All simulations are performed in a uniform-depth tank of depth <inline-formula><mml:math id="M221" display="inline"><mml:mi>H</mml:mi></mml:math></inline-formula> and  length <inline-formula><mml:math id="M222" display="inline"><mml:mrow><mml:mi>L</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">10</mml:mn><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. The domain is chosen to be sufficiently long to allow for the development of  non-linear effects within the generated waves. Uniformly sized rectangular spectral elements with 224 points per wavelength <inline-formula><mml:math id="M223" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> are employed in the horizontal direction, whereas 161 points span the entire water column in the vertical direction. The resolutions are given in Table <xref ref-type="table" rid="Ch1.T1"/>, and the elements are uniformly spaced in both length and height. The internal grid point distribution in each element consists of non-uniformly distributed two-dimensional Gauss–Lobatto–Legendre (GLL) integration points <xref ref-type="bibr" rid="bib1.bibx6" id="paren.50"/>.</p>

<table-wrap id="Ch1.T1"><label>Table 1</label><caption><p id="d2e6448">Grid point count and resolution for the two-dimensional simulations in a uniform-depth tank.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="2">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:tbody>
       <oasis:row>
         <oasis:entry colname="col1">Polynomial order (<inline-formula><mml:math id="M224" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col2">7</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Number of elements in the <inline-formula><mml:math id="M225" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> direction (<inline-formula><mml:math id="M226" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col2">120</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Number of elements  in the <inline-formula><mml:math id="M227" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> direction (<inline-formula><mml:math id="M228" display="inline"><mml:mrow><mml:msub><mml:mi>m</mml:mi><mml:mi>z</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col2">20</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Total number of points in the <inline-formula><mml:math id="M229" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> direction (<inline-formula><mml:math id="M230" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col2">2241</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Total number of points in the <inline-formula><mml:math id="M231" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> direction (<inline-formula><mml:math id="M232" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi>z</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>)</oasis:entry>
         <oasis:entry colname="col2">161</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M233" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>x</mml:mi><mml:mo>/</mml:mo><mml:mi>H</mml:mi></mml:mrow></mml:math></inline-formula> range</oasis:entry>
         <oasis:entry colname="col2">[0.0181, 0.0656]</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M234" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>z</mml:mi><mml:mo>/</mml:mo><mml:mi>H</mml:mi></mml:mrow></mml:math></inline-formula> range</oasis:entry>
         <oasis:entry colname="col2">[0.0025, 0.0091]</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

</sec>
<sec id="Ch1.S3.SS4.SSS2">
  <label>3.4.2</label><title>Limitations of the Eulerian approach</title>
      <p id="d2e6640">The limitations of the Eulerian approach for the wave forcing are visible in a  linear INSE solver (not shown here) but are more readily demonstrated in the framework of  a non-linear  solver of this type. As shown in Fig. <xref ref-type="fig" rid="Ch1.F4"/>a,  the Eulerian-generated <inline-formula><mml:math id="M235" display="inline"><mml:mi>u</mml:mi></mml:math></inline-formula> velocity field – namely, the shear layer between the upper and lower lobes of opposite velocity tracks horizontally along the location of the undisturbed pycnocline (similar to the top-left panel of Fig. <xref ref-type="fig" rid="Ch1.F3"/>)  and does not follow the actual pycnocline location (see bottom-left panel of Fig. <xref ref-type="fig" rid="Ch1.F3"/>). Immediately visible non-physical numerical features emerge near the forcing boundary at near grid scale, as evidenced by the lobes of alternating sign in the vertical velocity in that region. These spurious vertical velocities are a factor of 2 larger than the theoretically prescribed ones within the target wave, leading to a commensurate reduction in the time step by virtue of the Courant–Friedrichs–Lewy (CFL) condition. Finally,  non-negligible regions with density values that exceed the bounds of the background stratification by a factor of 2 to 2.5 are observed (see the blanked-out regions in Fig. <xref ref-type="fig" rid="Ch1.F4"/>c). These spurious numerical effects intensify as more waves are generated for the value <inline-formula><mml:math id="M236" display="inline"><mml:mrow><mml:mi mathvariant="italic">Fr</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.2</mml:mn></mml:mrow></mml:math></inline-formula>. Further intensification of these effects is observed at <inline-formula><mml:math id="M237" display="inline"><mml:mrow><mml:mi mathvariant="italic">Fr</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.5</mml:mn></mml:mrow></mml:math></inline-formula> (not shown). In this case, the non-physical non-linear interactions are strong enough to further amplify the near-source spurious vertical velocities and cause an aggressive and prohibitive reduction in the time step.</p>

      <fig id="Ch1.F4" specific-use="star"><label>Figure 4</label><caption><p id="d2e6685">Fully non-linear simulation using Eulerian wave-generation boundary conditions at <inline-formula><mml:math id="M238" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>/</mml:mo><mml:mi>T</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">5.8</mml:mn></mml:mrow></mml:math></inline-formula> for <inline-formula><mml:math id="M239" display="inline"><mml:mrow><mml:mi mathvariant="italic">Fr</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.2</mml:mn></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M240" display="inline"><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>/</mml:mo><mml:mi>H</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula>. The initial undisturbed pycnocline location is represented as a black line. Velocities <bold>(a, b)</bold> are normalized with their maximum values and the adjusted density <bold>(c)</bold> by the density jump at the pycnocline. Near-source near-grid-scale lobes of vertical velocity are a factor of 2 to 2.5 larger than that of the prescribed wave. White regions in the density contours correspond to values exceeding the color bar limits which are set by the undisturbed background density profile.</p></caption>
            <graphic xlink:href="https://npg.copernicus.org/articles/31/515/2024/npg-31-515-2024-f04.png"/>

          </fig>

      <p id="d2e6744">Numerical experimentation indicates that for cases with a well-defined pycnocline, the Eulerian approach produces robust waves and is effectively only valid for small-amplitude (<inline-formula><mml:math id="M241" display="inline"><mml:mrow><mml:mi mathvariant="italic">Fr</mml:mi><mml:mo>≲</mml:mo><mml:mn mathvariant="normal">0.05</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M242" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">η</mml:mi><mml:mtext>max</mml:mtext></mml:msub><mml:mo>/</mml:mo><mml:mi>H</mml:mi><mml:mo>≲</mml:mo><mml:mn mathvariant="normal">0.02</mml:mn></mml:mrow></mml:math></inline-formula>) and short-wavelength waves (<inline-formula><mml:math id="M243" display="inline"><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>/</mml:mo><mml:mi>H</mml:mi><mml:mo>≲</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula>). It is important to note that the ad hoc linearizing that leads to the Eulerian approach is effectively a linear truncation of a Taylor series. In the amplitude tending to the zero limit, the Eulerian and Euler–Lagrange approaches match.  However, even at moderate amplitudes, a significant mismatch is observed (see dotted black lines in Fig. <xref ref-type="fig" rid="Ch1.F4"/>). Our approach retains the notation of the Eulerian approach, which is easier to implement in a software setting but effectively introduces the higher-order terms in the Taylor series (at the cost of some algebra).</p>
</sec>
<sec id="Ch1.S3.SS4.SSS3">
  <label>3.4.3</label><title>Linearized Navier–Stokes simulations</title>
      <p id="d2e6804">To differentiate the features strictly resulting from the differences in the wave-generation approach from the ones resulting from the  non-linear effects downstream of the source, the first set of simulations are restricted to solving the linearized incompressible Navier–Stokes equations under the Boussinesq approximation. The non-linear terms have been dropped in Eqs. (<xref ref-type="disp-formula" rid="Ch1.E4"/>),  (<xref ref-type="disp-formula" rid="Ch1.E5"/>) and (<xref ref-type="disp-formula" rid="Ch1.E6"/>) analogously to what has been done in the linearized Euler equations, i.e., Eqs. (<xref ref-type="disp-formula" rid="Ch1.E19"/>), (<xref ref-type="disp-formula" rid="Ch1.E20"/>) and (<xref ref-type="disp-formula" rid="Ch1.E21"/>). Per the discussion of the previous section on the limitations of the Euler approach, only the Euler–Lagrange approach is considered here.</p>
      <p id="d2e6820">The sensitivity to including the <inline-formula><mml:math id="M244" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> dependence of the isopycnal displacement, <inline-formula><mml:math id="M245" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>, in the Euler–Lagrange approach is assessed in Fig. <xref ref-type="fig" rid="Ch1.F5"/> by examining the velocity and density fields that are produced by the approaches outlined in Sect. <xref ref-type="sec" rid="Ch1.S3.SS3.SSS1"/> and <xref ref-type="sec" rid="Ch1.S3.SS3.SSS2"/> per the corresponding expressions for <inline-formula><mml:math id="M246" display="inline"><mml:mrow><mml:msubsup><mml:mi>f</mml:mi><mml:mi>u</mml:mi><mml:mtext>E-L</mml:mtext></mml:msubsup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M247" display="inline"><mml:mrow><mml:msubsup><mml:mi>f</mml:mi><mml:mi>u</mml:mi><mml:mtext>optimized E-L</mml:mtext></mml:msubsup></mml:mrow></mml:math></inline-formula> in Eqs. (<xref ref-type="disp-formula" rid="Ch1.E37"/>) and (<xref ref-type="disp-formula" rid="Ch1.E45"/>). The forcing functions <inline-formula><mml:math id="M248" display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mi>w</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M249" display="inline"><mml:mrow><mml:msub><mml:mi>f</mml:mi><mml:mi mathvariant="italic">ρ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> have the same structure in both cases and are given by Eqs. (<xref ref-type="disp-formula" rid="Ch1.E38"/>) and (<xref ref-type="disp-formula" rid="Ch1.E39"/>), noting any adjustments for the <inline-formula><mml:math id="M250" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> dependence of <inline-formula><mml:math id="M251" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula> in the optimized Euler–Lagrange formulation. Results are shown after approximately seven wave periods since the initiation of deep-water boundary wave forcing.</p>

      <fig id="Ch1.F5" specific-use="star"><label>Figure 5</label><caption><p id="d2e6917">Comparison of the velocity and density structures generated by the two different Euler–Lagrange wave-generation approaches in a fully linear simulation at <inline-formula><mml:math id="M252" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>/</mml:mo><mml:mi>T</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">7.4</mml:mn></mml:mrow></mml:math></inline-formula>. The left panels, panels <bold>(a)</bold> and <bold>(c)</bold>, use the Euler–Lagrange approach and the right panels, panels <bold>(b)</bold> and <bold>(d)</bold>, use the optimized one. The bottom panels, panels <bold>(c)</bold> and <bold>(d)</bold>, correspond to an enhanced view of the respective top panels, panels <bold>(a)</bold> and <bold>(b)</bold>. Velocities are normalized with their maximum values and the adjusted density by the density jump at the pycnocline.</p></caption>
            <graphic xlink:href="https://npg.copernicus.org/articles/31/515/2024/npg-31-515-2024-f05.png"/>

          </fig>

      <p id="d2e6968">Close to the wave source, periodic shorter-wavelength features are observed for both approaches. These smaller-scale oscillations result from neither of the Euler–Lagrange approaches being an exact solution of the linearized Euler equations as discussed in Sect. <xref ref-type="sec" rid="Ch1.S3.SS3"/>.  The amplitude and downstream persistence, however, of these shorter-wavelength effects is markedly weaker in the optimized Euler–Lagrange approach (right panels in Fig. <xref ref-type="fig" rid="Ch1.F5"/>), because of the finite wavelength of the generated wave (see Sect. <xref ref-type="sec" rid="Ch1.S3.SS3"/>). To this end, the optimized Euler–Lagrange approach is the method of choice in the fully non-linear simulations given that our baseline wave has an aspect ratio of <inline-formula><mml:math id="M253" display="inline"><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>/</mml:mo><mml:mi>H</mml:mi></mml:mrow></mml:math></inline-formula>: using it minimizes any possible non-linear interactions between the above parasitic smaller-scale waves and the main target wave which otherwise pose non-trivial challenges for the robustness of the latter wave.</p>
</sec>
<sec id="Ch1.S3.SS4.SSS4">
  <label>3.4.4</label><title>Fully non-linear simulations</title>
      <p id="d2e6997">The resulting velocity and density fields, obtained by solving the fully non-linear Navier–Stokes equations under the Boussinesq approximation (Eqs. <xref ref-type="disp-formula" rid="Ch1.E4"/>, <xref ref-type="disp-formula" rid="Ch1.E5"/> and <xref ref-type="disp-formula" rid="Ch1.E6"/>), forced by the optimized Euler–Lagrange approach are shown in Fig. <xref ref-type="fig" rid="Ch1.F6"/> after 10 wave periods. The spurious numerical features close to the boundary have been found to be significantly weaker (not shown here) as compared to what is shown in Fig. <xref ref-type="fig" rid="Ch1.F4"/>, whereas the shear layer of the horizontal velocity field tracks the oscillating pycnocline according to Fig. <xref ref-type="fig" rid="Ch1.F3"/> and does not affect the wave generation. Additionally, no spurious mass generation is observed, with density values restricted within the limits dictated by the background stratification. Finally, near-grid-scale vertical velocity near the source remains very small in magnitude and such that the wave-induced vertical velocity is the only factor controlling the time step, as expected. The non-linear response of the generated wave may now be examined along the propagation path without contamination by spurious non-linear interactions due to small-scale near-source transients.</p>

      <fig id="Ch1.F6" specific-use="star"><label>Figure 6</label><caption><p id="d2e7015">Fully non-linear simulation using optimized Euler–Lagrange wave-generation boundary conditions at <inline-formula><mml:math id="M254" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>/</mml:mo><mml:mi>T</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula>. Velocities <bold>(a, b)</bold> are normalized with their maximum values and the adjusted density <bold>(c)</bold> by the density jump at the pycnocline.</p></caption>
            <graphic xlink:href="https://npg.copernicus.org/articles/31/515/2024/npg-31-515-2024-f06.png"/>

          </fig>

      <p id="d2e7046">The structure of the generated waves is indeed visibly modified by non-linearity as they propagate away from their source, with different waveform geometries becoming immediately identifiable as a function of distance from the source. Figure <xref ref-type="fig" rid="Ch1.F7"/> attempts to offer such a waveform classification across three different sub-windows along the propagation path. Figure <xref ref-type="fig" rid="Ch1.F7"/>a shows waves of depression that develop close to the source. Since the particular waves have large flat plateaus and narrow troughs, a clear similarity with cnoidal waves <xref ref-type="bibr" rid="bib1.bibx5" id="paren.51"/> is suggested. During a transitional phase, shown in Fig. <xref ref-type="fig" rid="Ch1.F7"/>c, the wave troughs broaden. Further downstream, the waves tend to assume a near-sinusoidal shape with  peaks and troughs of comparable width (Fig. <xref ref-type="fig" rid="Ch1.F7"/>e).</p>

      <fig id="Ch1.F7" specific-use="star"><label>Figure 7</label><caption><p id="d2e7063">Exploded view of full density contours at different downstream locations for the waves shown in Fig. <xref ref-type="fig" rid="Ch1.F6"/>, illustrating the development of waveforms <bold>(a, c, e)</bold>. Respective streamwise Fourier spectra <inline-formula><mml:math id="M255" display="inline"><mml:mover accent="true"><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo stretchy="false" mathvariant="normal">^</mml:mo></mml:mover></mml:math></inline-formula> of <inline-formula><mml:math id="M256" display="inline"><mml:mrow><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, computed at <inline-formula><mml:math id="M257" display="inline"><mml:mrow><mml:mi>z</mml:mi><mml:mo>/</mml:mo><mml:mi>H</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>z</mml:mi><mml:mi mathvariant="normal">p</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:mn mathvariant="normal">0.4</mml:mn></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M258" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>/</mml:mo><mml:mi>T</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> and normalized by the maximum peak depending on the wavenumber normalized by the prescribed wave number <inline-formula><mml:math id="M259" display="inline"><mml:mrow><mml:msub><mml:mi>k</mml:mi><mml:mi>x</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <bold>(b, d, f)</bold>.</p></caption>
            <graphic xlink:href="https://npg.copernicus.org/articles/31/515/2024/npg-31-515-2024-f07.png"/>

          </fig>

      <p id="d2e7157">A more quantitative description of the different types of observed waveforms is enabled by examining the corresponding along-wave spectral content. One-dimensional spatial fast Fourier transforms (FFTs) of the density <inline-formula><mml:math id="M260" display="inline"><mml:mrow><mml:mover accent="true"><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo mathvariant="normal" stretchy="false">^</mml:mo></mml:mover><mml:mo>(</mml:mo><mml:mi>k</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> are computed streamwise for each sub-window focused at the depth of the undisturbed pycnocline. Special attention needs to be paid when computing the FFTs for the simulations at hand, since the internal grid point distribution within each spectral is non-uniform (Sect. <xref ref-type="sec" rid="Ch1.S3.SS4.SSS1"/>). A non-uniform FFT algorithm is therefore used <xref ref-type="bibr" rid="bib1.bibx14 bib1.bibx45" id="paren.52"/>, as it is well tested and readily available.</p>
      <p id="d2e7182">Closer examination of the right column of panels in Fig. <xref ref-type="fig" rid="Ch1.F7"/>, suggests that the along-wave spectral content has power spectral density in regions not specified by the forcing. In particular, a strong second harmonic persists at a downstream distance as large as <inline-formula><mml:math id="M261" display="inline"><mml:mrow><mml:mn mathvariant="normal">60</mml:mn><mml:mi>H</mml:mi></mml:mrow></mml:math></inline-formula>. Further downstream of the forcing boundary, the amplitude of this harmonic significantly attenuates, resulting in a wave that is closer to being monochromatic (as confirmed by the visualization of Fig. <xref ref-type="fig" rid="Ch1.F7"/>e). In the context of a fully non-linear simulation with a sloping boundary, adjusting the length of the section of the computational domain over which the waves propagate prior to reaching the slope allows one to decide how much the waves are allowed to naturally adjust due to their finite amplitude and dispersion. Equivalent simulations, which separate the slope from the source by only a fraction of the horizontal wavelength <xref ref-type="bibr" rid="bib1.bibx35 bib1.bibx36" id="paren.53"/>, are not expected to support a non-linearly adjusted (and potentially steepened) waveform as the incident wave reaches a slope.</p>
      <p id="d2e7202">The vertically integrated kinetic energy (KE) at any down-stream position <inline-formula><mml:math id="M262" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> is
              <disp-formula id="Ch1.E48" content-type="numbered"><label>48</label><mml:math id="M263" display="block"><mml:mrow><mml:mtext>KE</mml:mtext><mml:mo>=</mml:mo><mml:munderover><mml:mo movablelimits="false">∫</mml:mo><mml:mrow><mml:mo>-</mml:mo><mml:mi>H</mml:mi></mml:mrow><mml:mn mathvariant="normal">0</mml:mn></mml:munderover><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mn mathvariant="normal">2</mml:mn></mml:mfrac></mml:mstyle><mml:msub><mml:mi mathvariant="italic">ρ</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:msup><mml:mi>u</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>+</mml:mo><mml:msup><mml:mi>w</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>)</mml:mo><mml:mi mathvariant="normal">d</mml:mi><mml:mi>z</mml:mi><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d2e7265">KE is shown as a function of time and position for both the fully linear case (Fig. <xref ref-type="fig" rid="Ch1.F8"/>a) and non-linear case (Fig. <xref ref-type="fig" rid="Ch1.F8"/>b). The theoretically prescribed characteristic of energy transport given by the wave speed, <inline-formula><mml:math id="M264" display="inline"><mml:mrow><mml:mi>c</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mi>x</mml:mi></mml:msub><mml:mo>/</mml:mo><mml:mi>T</mml:mi></mml:mrow></mml:math></inline-formula>, is also plotted. Figure <xref ref-type="fig" rid="Ch1.F9"/> presents the interpolation of the kinetic energy along the prescribed characteristic of energy transport in the linear case, shown in white in Fig. <xref ref-type="fig" rid="Ch1.F8"/>a. The slope of the KE contours, a measure of the group velocity, appears to match well with the theoretical value. Viscous decay can be considered negligible since the wave-based Reynolds number is chosen to be <inline-formula><mml:math id="M265" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">Re</mml:mi><mml:mi mathvariant="normal">w</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:msubsup><mml:mi mathvariant="italic">λ</mml:mi><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mo>/</mml:mo><mml:mi mathvariant="italic">ν</mml:mi><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mi>T</mml:mi><mml:mo>≫</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:math></inline-formula>. The deviation along the characteristic in Fig. <xref ref-type="fig" rid="Ch1.F9"/> can therefore be attributed to the dispersive aspect of the continuous two-layer stratification. In the non-linear case, characteristics also appear to be parallel to the theoretical solution even if the KE is not constant along it due to non-linearities generating extra wavelengths.</p>

      <fig id="Ch1.F8" specific-use="star"><label>Figure 8</label><caption><p id="d2e7337">Vertically integrated kinetic energy KE normalized by its maximum value <inline-formula><mml:math id="M266" display="inline"><mml:mrow><mml:msup><mml:mtext>KE</mml:mtext><mml:mo>*</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> as a function of the downstream position and time for both the linear and non-linear case. The white line corresponds the theoretical energy transport characteristic, <inline-formula><mml:math id="M267" display="inline"><mml:mrow><mml:mi>x</mml:mi><mml:mo>=</mml:mo><mml:mi>c</mml:mi><mml:mo>×</mml:mo><mml:mi>t</mml:mi></mml:mrow></mml:math></inline-formula>.</p></caption>
            <graphic xlink:href="https://npg.copernicus.org/articles/31/515/2024/npg-31-515-2024-f08.png"/>

          </fig>

      <fig id="Ch1.F9"><label>Figure 9</label><caption><p id="d2e7375">Kinetic energy along the prescribed characteristic of energy transport in the linear case shown in Fig. <xref ref-type="fig" rid="Ch1.F8"/>a.</p></caption>
            <graphic xlink:href="https://npg.copernicus.org/articles/31/515/2024/npg-31-515-2024-f09.png"/>

          </fig>

</sec>
</sec>
</sec>
<sec id="Ch1.S4">
  <label>4</label><title>Discussion</title>
      <p id="d2e7396">The generation process of finite-amplitude periodic waves through a time-dependent deep-water Dirichlet boundary condition has been examined for the case of a quasi two-layer continuous stratification (Fig. <xref ref-type="fig" rid="Ch1.F1"/>). In the case of a linear stratification, <inline-formula><mml:math id="M268" display="inline"><mml:mrow><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> is constant in time and space and therefore Eq. (<xref ref-type="disp-formula" rid="Ch1.E16"/>) has an analytical solution, <inline-formula><mml:math id="M269" display="inline"><mml:mrow><mml:msub><mml:mi>W</mml:mi><mml:mi>n</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. Such a solution leads to an exact expression of the perturbation fields for the linear Euler equations under the Boussinesq approximation with an analytical vertical structure and explicit time dependence (see Appendix <xref ref-type="sec" rid="App1.Ch1.S2"/>). The amplitude of the generated waves can non-trivially exceed the limit prescribed by linear theory without any impact on wave robustness as evidenced by the deep-water waves used in the linearly stratified simulations of <xref ref-type="bibr" rid="bib1.bibx58" id="text.54"/>.</p>
      <p id="d2e7431">As described in Sect. <xref ref-type="sec" rid="Ch1.S3"/>, the quasi two-layer  stratification studied here appears to be more complex. In this context, we do not have an analytical expression for <inline-formula><mml:math id="M270" display="inline"><mml:mrow><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>,</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, leading to the different approximations introduced in this study. These extra layers of approximations will therefore tighten the amplitude limitations of the wave that can be generated. Nevertheless, depending on the chosen stratification, numerical experiments (not shown here) have demonstrated that robust waves of up to <inline-formula><mml:math id="M271" display="inline"><mml:mrow><mml:mi mathvariant="italic">Fr</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.5</mml:mn></mml:mrow></mml:math></inline-formula> are achievable using the optimized Euler–Lagrange approach.</p>
      <p id="d2e7466">Another important feature that has been demonstrated by Fig. <xref ref-type="fig" rid="Ch1.F7"/> is the fact that in the quasi two-layer continuous stratification the forcing produces wave-trains that are non-monochromatic. Equation (<xref ref-type="disp-formula" rid="Ch1.E44"/>) reveals that the optimized Euler–Lagrange approach results from the multiplication of temporarily oscillating terms, leading to the appearance of multiple harmonic wavelengths in the generated wave. Sufficiently downstream of the source, the strength of these harmonics seems to diminish for the <inline-formula><mml:math id="M272" display="inline"><mml:mrow><mml:mi mathvariant="italic">Fr</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.2</mml:mn></mml:mrow></mml:math></inline-formula> waves shown in Fig. <xref ref-type="fig" rid="Ch1.F7"/>e, with wave-induced perturbations that may be regarded as assuming a near-sinusoidal waveform. Nonetheless, the wave trains at the same downstream location in our experiments, with <inline-formula><mml:math id="M273" display="inline"><mml:mrow><mml:mi mathvariant="italic">Fr</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.5</mml:mn></mml:mrow></mml:math></inline-formula> (not shown here), are found to remain remarkably non-linear, with extremely steep fronts therein.</p>
      <p id="d2e7499">Per the literature review in the introduction, the only other computational study considering the generation of long finite-amplitude waves in a two-layer stratification with sufficient distance for the waves to develop downstream of the source that the authors are aware of is that of <xref ref-type="bibr" rid="bib1.bibx9" id="text.55"/>. We suspect that no issues were reported with regard to the deep-water generated waves for two reasons. First, motivated by apparently different objectives than this study, the use of the wave aspect ratio of <inline-formula><mml:math id="M274" display="inline"><mml:mrow><mml:mi mathvariant="italic">λ</mml:mi><mml:mo>/</mml:mo><mml:mi>H</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">200</mml:mn></mml:mrow></mml:math></inline-formula> is remarkably long and, most likely, restrictive if a turbulence-resolving capability (and not a turbulence parameterization) is preferred. Additionally, the inferred normalized pycnocline thickness value of <inline-formula><mml:math id="M275" display="inline"><mml:mrow><mml:mi mathvariant="italic">δ</mml:mi><mml:mo>/</mml:mo><mml:mi>H</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.35</mml:mn></mml:mrow></mml:math></inline-formula> is more representative of that in the oceanic continental shelf and not of a deep and long seasonally stratified lake, the primary motivator of this study. Most importantly, noting that <inline-formula><mml:math id="M276" display="inline"><mml:mrow><mml:mi>A</mml:mi><mml:mi>k</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mi>W</mml:mi><mml:mtext>max</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, where <inline-formula><mml:math id="M277" display="inline"><mml:mrow><mml:msub><mml:mi>W</mml:mi><mml:mtext>max</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> is the maximum wave-induced vertical velocity, Dauhajre et al. (2021)  work with a typical value of <inline-formula><mml:math id="M278" display="inline"><mml:mrow><mml:mi>A</mml:mi><mml:mo>/</mml:mo><mml:mo>(</mml:mo><mml:mi mathvariant="italic">δ</mml:mi><mml:mi>c</mml:mi><mml:mo>)</mml:mo><mml:mo>≈</mml:mo><mml:mn mathvariant="normal">1.8</mml:mn></mml:mrow></mml:math></inline-formula>. These non-dimensional parameter values along with any reduction in the curvature at the base of the pycnocline through the insertion of a weakly yet non-trivially stratified lower layer may diminish the intensity of any Euler–Lagrange effects per Eq. (<xref ref-type="disp-formula" rid="Ch1.E30"/>) and the associated discussion. Finally, it is unclear how the numerical dissipation built into the <inline-formula><mml:math id="M279" display="inline"><mml:mi>K</mml:mi></mml:math></inline-formula>-profile parameterization <xref ref-type="bibr" rid="bib1.bibx30" id="paren.56"/> actively used by <xref ref-type="bibr" rid="bib1.bibx9" id="text.57"/> may have damped out any near-source short-wavelength initialization transients such as those reported in Sect. <xref ref-type="sec" rid="Ch1.S3.SS4.SSS3"/>.</p>
</sec>
<sec id="Ch1.S5" sec-type="conclusions">
  <label>5</label><title>Conclusions</title>
      <p id="d2e7614">This study has examined the formulation of robust finite-amplitude periodic internal-wave-generating boundary conditions for a non-linear stratification, highlighting extra levels of subtlety compared to the linear stratification case while relying on a higher-order-of-accuracy spectral element method to discretize the governing equations. The commonly used Eulerian approach, which relies on a fixed reference frame, is found to develop non-trivial errors when implemented in simulations with a sharp quasi two-layer continuous stratification and higher-amplitude internal waves with a horizontal-wavelength-to-depth (wave aspect) ratio that is finite albeit not excessively large. This results in errors because the prescribed wave forcing assumes a fixed/unperturbed pycnocline and does not account for the upstream and vertical wave-induced displacement of the pycnocline. This mismatch between fixed wave-forcing and moving pycnocline is shown to scale with the parameter <inline-formula><mml:math id="M280" display="inline"><mml:mrow><mml:mi>A</mml:mi><mml:mo>/</mml:mo><mml:mo>(</mml:mo><mml:mi mathvariant="italic">δ</mml:mi><mml:mi>c</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, where <inline-formula><mml:math id="M281" display="inline"><mml:mi>A</mml:mi></mml:math></inline-formula> is a measure of wave amplitude, <inline-formula><mml:math id="M282" display="inline"><mml:mi mathvariant="italic">δ</mml:mi></mml:math></inline-formula> is the pycnocline thickness and <inline-formula><mml:math id="M283" display="inline"><mml:mi>c</mml:mi></mml:math></inline-formula> is the wave propagation speed. Simulations with values of <inline-formula><mml:math id="M284" display="inline"><mml:mrow><mml:mi>A</mml:mi><mml:mo>/</mml:mo><mml:mo>(</mml:mo><mml:mi mathvariant="italic">δ</mml:mi><mml:mi>c</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula> show spurious mass generation near the wave-generating source, with accompanying unphysical near-grid-scale vertical velocities that can detrimentally reduce the computational time step and even prohibitively restrict it for a long enough time and higher values of the wave-induced Froude number, <inline-formula><mml:math id="M285" display="inline"><mml:mi mathvariant="italic">Fr</mml:mi></mml:math></inline-formula>. The minimal numerical dissipation of the spectral element method cannot damp these spurious numerical features.</p>
      <p id="d2e7686">For values of <inline-formula><mml:math id="M286" display="inline"><mml:mrow><mml:mi>A</mml:mi><mml:mo>/</mml:mo><mml:mo>(</mml:mo><mml:mi mathvariant="italic">δ</mml:mi><mml:mi>c</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> sufficiently larger than unity, an Euler–Lagrange approach needs to be used instead in the wave generation, which does account for the above pycnocline displacement. Although  an exact solution of the linearized Euler equations under the Boussinesq approximation is not actually attained through this approach, the resulting waves are sufficiently robust: they can propagate away from the source; non-linear adjustments of their waveform are possible through leveraging the higher-order-accuracy spectral element scheme.</p>
      <p id="d2e7707">The findings of this study will serve as a platform to enable a detailed numerical study of internal swash zones (ISZs), which are zones driven by the interaction of long periodic non-linear internal waves with a sloping boundary. Such simulations will aim to investigate the parameter space in two dimensions, which would include the wave Froude number; pycnocline thickness and depth; wave–aspect ratio; slope value; and the role of no-slip vs. free-slip boundary conditions, particularly on the slope. Select two-dimensional studies will operate as the springboard for full-scale three-dimensional turbulence-resolving simulations These larger simulations may invariably be restricted by existing computational resources to wave aspect ratios in the range <inline-formula><mml:math id="M287" display="inline"><mml:mrow><mml:mo>[</mml:mo><mml:mn mathvariant="normal">20</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">40</mml:mn><mml:mo>]</mml:mo></mml:mrow></mml:math></inline-formula>. As our interests are motivated by internal swash zones in seasonally stratified deep lakes,  we will use a two-layer continuous stratification with thinner pycnoclines typical of such environments <xref ref-type="bibr" rid="bib1.bibx48" id="paren.58"/>. As such, the parameter <inline-formula><mml:math id="M288" display="inline"><mml:mrow><mml:mi>A</mml:mi><mml:mo>/</mml:mo><mml:mo>(</mml:mo><mml:mi mathvariant="italic">δ</mml:mi><mml:mi>c</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> will be non-trivially larger than unity. To address this region of parameter space, an Euler–Lagrange approach is needed to account for the wave-induced displacement of the isopycnal field in both vertical and horizontal directions. The optimized Euler–Lagrange approach will be used to generate robust high-amplitude deep-water internal waves at values of the Froude number of up to <inline-formula><mml:math id="M289" display="inline"><mml:mrow><mml:mi mathvariant="italic">Fr</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.2</mml:mn></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d2e7759">A parallel avenue of future investigation into the findings of this paper may be their translation to experimental internal-wave generators. Horizontally oscillating paddles are reported as limited to significantly short waves with an aspect ratio of around 10 <xref ref-type="bibr" rid="bib1.bibx19" id="paren.59"/>. The vertically stacked plate/eccentric camshaft structure of Mercier, Gostiaux and co-workers <xref ref-type="bibr" rid="bib1.bibx39 bib1.bibx20" id="paren.60"/>, through its ability to reproduce a baroclinic structure in the vertical, may be the most amenable experimental technique to adopt aspects of the optimized Euler–Lagrange approach presented here.</p>
</sec>

      
      </body>
    <back><app-group>

<app id="App1.Ch1.S1">
  <label>Appendix A</label><title>Spectral element method</title>
      <p id="d2e7779">Following the work of <xref ref-type="bibr" rid="bib1.bibx12" id="text.61"/>, the Poisson problem (see Eq. <xref ref-type="disp-formula" rid="Ch1.E14"/>) can be rewritten as follows:
          <disp-formula id="App1.Ch1.S1.E49" content-type="numbered"><label>A1</label><mml:math id="M290" display="block"><mml:mrow><mml:mo>-</mml:mo><mml:msubsup><mml:mi mathvariant="normal">∇</mml:mi><mml:mrow><mml:mi>x</mml:mi><mml:mi>z</mml:mi></mml:mrow><mml:mn mathvariant="normal">2</mml:mn></mml:msubsup><mml:mi>p</mml:mi><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mi>f</mml:mi></mml:mrow></mml:math></disp-formula>
        The discretization of the Laplacian in the non-homogeneous directions <inline-formula><mml:math id="M291" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M292" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> is presented. Let <inline-formula><mml:math id="M293" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="script">V</mml:mi><mml:mi>N</mml:mi></mml:msup><mml:mo>⊂</mml:mo><mml:msup><mml:mi>H</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msup><mml:mo>(</mml:mo><mml:mi mathvariant="normal">Ω</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> be a finite subspace where <inline-formula><mml:math id="M294" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi>v</mml:mi><mml:mo>∈</mml:mo><mml:msup><mml:mi mathvariant="script">V</mml:mi><mml:mi>N</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> are a part of the solution. Accordingly, the weak form of Eq. (<xref ref-type="disp-formula" rid="App1.Ch1.S1.E49"/>) under the Galerkin approximation becomes
          <disp-formula id="App1.Ch1.S1.E50" content-type="numbered"><label>A2</label><mml:math id="M295" display="block"><mml:mrow><mml:munder><mml:mo movablelimits="false">∫</mml:mo><mml:mi mathvariant="normal">Ω</mml:mi></mml:munder><mml:mi mathvariant="normal">∇</mml:mi><mml:mi>v</mml:mi><mml:mo>⋅</mml:mo><mml:mi mathvariant="normal">∇</mml:mi><mml:mi>p</mml:mi><mml:mi mathvariant="normal">d</mml:mi><mml:mi mathvariant="normal">Ω</mml:mi><mml:mo>=</mml:mo><mml:munder><mml:mo movablelimits="false">∫</mml:mo><mml:mi mathvariant="normal">Ω</mml:mi></mml:munder><mml:mi>v</mml:mi><mml:mi>f</mml:mi><mml:mi mathvariant="normal">d</mml:mi><mml:mi mathvariant="normal">Ω</mml:mi><mml:mo>+</mml:mo><mml:munder><mml:mo movablelimits="false">∮</mml:mo><mml:mrow><mml:mo>∂</mml:mo><mml:mi mathvariant="normal">Ω</mml:mi></mml:mrow></mml:munder><mml:mi>v</mml:mi><mml:mi mathvariant="normal">∇</mml:mi><mml:mi>p</mml:mi><mml:mo>⋅</mml:mo><mml:mi mathvariant="bold">n</mml:mi><mml:mi mathvariant="normal">d</mml:mi><mml:mi>S</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
        where <inline-formula><mml:math id="M296" display="inline"><mml:mrow><mml:mi mathvariant="normal">∇</mml:mi><mml:mi>p</mml:mi><mml:mo>⋅</mml:mo><mml:mi mathvariant="bold">n</mml:mi><mml:mo>=</mml:mo><mml:mo>∂</mml:mo><mml:mi>p</mml:mi><mml:mo>/</mml:mo><mml:mo>∂</mml:mo><mml:mi mathvariant="bold">n</mml:mi></mml:mrow></mml:math></inline-formula> is the natural boundary condition <xref ref-type="bibr" rid="bib1.bibx10" id="paren.62"/>. By defining <inline-formula><mml:math id="M297" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="script">V</mml:mi><mml:mi>N</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> as the finite subspace spanned by two-dimensional Lagrangian basis functions up to the order of <inline-formula><mml:math id="M298" display="inline"><mml:mi>N</mml:mi></mml:math></inline-formula>, i.e., <inline-formula><mml:math id="M299" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="script">V</mml:mi><mml:mi>N</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:mtext>span</mml:mtext><mml:mo mathvariant="italic">{</mml:mo><mml:msub><mml:mi>h</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>,</mml:mo><mml:mi mathvariant="normal">…</mml:mi><mml:mo>,</mml:mo><mml:msub><mml:mi>h</mml:mi><mml:mi>n</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>x</mml:mi><mml:mo>,</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo mathvariant="italic">}</mml:mo></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M300" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M301" display="inline"><mml:mi>v</mml:mi></mml:math></inline-formula> are approximated as <inline-formula><mml:math id="M302" display="inline"><mml:mrow><mml:mi>p</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mo>∑</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:msub><mml:mi>p</mml:mi><mml:mi>k</mml:mi></mml:msub><mml:msub><mml:mi>h</mml:mi><mml:mi>k</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M303" display="inline"><mml:mrow><mml:mi>v</mml:mi><mml:mo>=</mml:mo><mml:msub><mml:mo>∑</mml:mo><mml:mi>k</mml:mi></mml:msub><mml:msub><mml:mi>v</mml:mi><mml:mi>k</mml:mi></mml:msub><mml:msub><mml:mi>h</mml:mi><mml:mi>k</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, where <inline-formula><mml:math id="M304" display="inline"><mml:mrow><mml:mi>k</mml:mi><mml:mo>∈</mml:mo><mml:mo mathvariant="italic">{</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mi mathvariant="normal">…</mml:mi><mml:mo>,</mml:mo><mml:mi>n</mml:mi><mml:mo mathvariant="italic">}</mml:mo></mml:mrow></mml:math></inline-formula> is the corresponding index set, and <inline-formula><mml:math id="M305" display="inline"><mml:mi>n</mml:mi></mml:math></inline-formula> is the total number of degrees of freedom on the <inline-formula><mml:math id="M306" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula>–<inline-formula><mml:math id="M307" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula> plane. Note that each element has the same polynomial order. Thus, the discretized Eq. (<xref ref-type="disp-formula" rid="App1.Ch1.S1.E50"/>) is written in matrix form:
          <disp-formula id="App1.Ch1.S1.E51" content-type="numbered"><label>A3</label><mml:math id="M308" display="block"><mml:mrow><mml:mi>K</mml:mi><mml:mi mathvariant="bold">p</mml:mi><mml:mo>=</mml:mo><mml:mi>M</mml:mi><mml:mi mathvariant="bold">f</mml:mi><mml:mo>⇒</mml:mo><mml:mi>K</mml:mi><mml:mi mathvariant="bold">p</mml:mi><mml:mo>=</mml:mo><mml:mi mathvariant="bold">g</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
        where  <inline-formula><mml:math id="M309" display="inline"><mml:mrow><mml:msub><mml:mi>K</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mo>∫</mml:mo><mml:mi mathvariant="normal">Ω</mml:mi></mml:msub><mml:mi mathvariant="normal">∇</mml:mi><mml:msub><mml:mi>h</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:mo>⋅</mml:mo><mml:mi mathvariant="normal">∇</mml:mi><mml:msub><mml:mi>h</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:mi mathvariant="normal">d</mml:mi><mml:mi mathvariant="normal">Ω</mml:mi></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M310" display="inline"><mml:mrow><mml:msub><mml:mi>M</mml:mi><mml:mrow><mml:mi>i</mml:mi><mml:mi>j</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mo>∫</mml:mo><mml:mi mathvariant="normal">Ω</mml:mi></mml:msub><mml:msub><mml:mi>h</mml:mi><mml:mi>i</mml:mi></mml:msub><mml:msub><mml:mi>h</mml:mi><mml:mi>j</mml:mi></mml:msub><mml:mi mathvariant="normal">d</mml:mi><mml:mi mathvariant="normal">Ω</mml:mi></mml:mrow></mml:math></inline-formula> are the respective entries of the assembled stiffness and mass matrices <xref ref-type="bibr" rid="bib1.bibx10" id="paren.63"/>, where <inline-formula><mml:math id="M311" display="inline"><mml:mrow><mml:mi>i</mml:mi><mml:mo>,</mml:mo><mml:mi>j</mml:mi><mml:mo>∈</mml:mo><mml:mo mathvariant="italic">{</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mi mathvariant="normal">…</mml:mi><mml:mo>,</mml:mo><mml:mi>n</mml:mi><mml:mo mathvariant="italic">}</mml:mo></mml:mrow></mml:math></inline-formula>. Note that the viscous/diffusive equations for the velocity and density field follow the same weak-form-based formulation and discretization.</p>
      <p id="d2e8304">A non-overlapping domain decomposition (DD) method with iterative substructuring/static condensation is used when solving for the pressure <xref ref-type="bibr" rid="bib1.bibx25" id="paren.64"/>. In tandem with a logically Cartesian topology, Eq. (<xref ref-type="disp-formula" rid="App1.Ch1.S1.E51"/>) is broken down into a hierarchy of smaller problems with homogeneous Dirichlet boundary conditions for the two levels of the condensation <xref ref-type="bibr" rid="bib1.bibx25 bib1.bibx24 bib1.bibx10" id="paren.65"/>. Once the second and last stage of DD is reached, a Schur complement problem on the vertical interfaces, <inline-formula><mml:math id="M312" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">Γ</mml:mi><mml:mi>v</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>, of the subdomains is iteratively solved. In the context of the hierarchy of problems, a subsequent backward sweep ensures the solution on the global computational domain.</p>
      <p id="d2e8326">A simple strategy is adopted for the numerical solution of the viscous and diffusive parts of the solver. It is during this step of the solver where boundary conditions for the velocity field and the density perturbation are enforced <xref ref-type="bibr" rid="bib1.bibx11" id="paren.66"/>. Following the discretization presented above, the respective Helmholtz matrix, <inline-formula><mml:math id="M313" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="bold">H</mml:mi><mml:mi>u</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula>, is given by
          <disp-formula id="App1.Ch1.S1.E52" content-type="numbered"><label>A4</label><mml:math id="M314" display="block"><mml:mrow><mml:msup><mml:mi mathvariant="bold">H</mml:mi><mml:mi>u</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:mi mathvariant="italic">α</mml:mi><mml:mi mathvariant="bold">K</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="bold">M</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
        where the time-step coefficient <inline-formula><mml:math id="M315" display="inline"><mml:mi mathvariant="italic">α</mml:mi></mml:math></inline-formula> scales linearly with <inline-formula><mml:math id="M316" display="inline"><mml:mrow><mml:mi mathvariant="italic">ν</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:math></inline-formula> or <inline-formula><mml:math id="M317" display="inline"><mml:mrow><mml:mi mathvariant="italic">κ</mml:mi><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:math></inline-formula>.</p>
</app>

<app id="App1.Ch1.S2">
  <label>Appendix B</label><title>Details on the derivation of the vertical structure in the linear stratification case</title>
      <p id="d2e8407">In the case of a  linear stratification, we have by definition
          <disp-formula id="App1.Ch1.S2.E53" content-type="numbered"><label>B1</label><mml:math id="M318" display="block"><mml:mrow><mml:mi>N</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:msub><mml:mi>N</mml:mi><mml:mn mathvariant="normal">0</mml:mn></mml:msub><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
      <p id="d2e8432">Equation (<xref ref-type="disp-formula" rid="Ch1.E16"/>) becomes a classic second-order linear differential equation, analogous to that of a simple harmonic oscillator. The solution is oscillatory in <inline-formula><mml:math id="M319" display="inline"><mml:mi>z</mml:mi></mml:math></inline-formula>:
          <disp-formula id="App1.Ch1.S2.E54" content-type="numbered"><label>B2</label><mml:math id="M320" display="block"><mml:mrow><mml:msub><mml:mi>W</mml:mi><mml:mi>n</mml:mi></mml:msub><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mi>sin⁡</mml:mi><mml:mfenced open="(" close=")"><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>n</mml:mi><mml:mi mathvariant="italic">π</mml:mi><mml:mi>z</mml:mi></mml:mrow><mml:mi>H</mml:mi></mml:mfrac></mml:mstyle></mml:mfenced><mml:mspace width="0.33em" linebreak="nobreak"/><mml:mtext>with</mml:mtext><mml:mspace linebreak="nobreak" width="0.33em"/><mml:msub><mml:mi>k</mml:mi><mml:mi>n</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>n</mml:mi><mml:mi mathvariant="italic">π</mml:mi></mml:mrow><mml:mi>H</mml:mi></mml:mfrac></mml:mstyle><mml:msup><mml:mfenced close=")" open="("><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:msup><mml:mi mathvariant="italic">ω</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow><mml:mrow><mml:msup><mml:mi>N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="italic">ω</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle></mml:mfenced><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula></p>
</app>

<app id="App1.Ch1.S3">
  <label>Appendix C</label><title>Subtleties of the implementation of the time-dependent deep-water boundary conditions</title>
      <p id="d2e8537">To implement the different time-dependent deep-water boundary condition approaches described in Sect. <xref ref-type="sec" rid="Ch1.S3.SS2"/> and <xref ref-type="sec" rid="Ch1.S3.SS3"/>, the eigenfunction <inline-formula><mml:math id="M321" display="inline"><mml:mrow><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and corresponding eigenvalue <inline-formula><mml:math id="M322" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula> need to be calculated from Eqs. (<xref ref-type="disp-formula" rid="Ch1.E16"/>) and (<xref ref-type="disp-formula" rid="Ch1.E17"/>). A high-order spectral element method <xref ref-type="bibr" rid="bib1.bibx12" id="paren.67"/> is used to for this purpose.</p>
      <p id="d2e8573">The values of the eigenfunction and its vertical derivative on locations offset from the actual grid points, <inline-formula><mml:math id="M323" display="inline"><mml:mrow><mml:mi>W</mml:mi><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M324" display="inline"><mml:mrow><mml:msup><mml:mi>W</mml:mi><mml:mo>′</mml:mo></mml:msup><mml:mo>(</mml:mo><mml:mi>z</mml:mi><mml:mo>-</mml:mo><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, are required for either of the Euler–Lagrange approaches (see Sect. <xref ref-type="sec" rid="Ch1.S3.SS3"/>). These values are obtained at each time step through a cubic spline interpolation in the vertical.</p>
      <p id="d2e8617">Additionally, to reduce transient-driven contamination of the generated deep-water waves and force both velocity components and density perturbation to be zero at the deep-water boundary at time <inline-formula><mml:math id="M325" display="inline"><mml:mrow><mml:mi>t</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula>,  the amplitude of the boundary forcing is ramped up in time through application of an exponential envelope. The three forcing expressions for <inline-formula><mml:math id="M326" display="inline"><mml:mi>u</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M327" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M328" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="italic">ρ</mml:mi><mml:mo>′</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> (see Sect. <xref ref-type="sec" rid="Ch1.S3.SS2"/> and <xref ref-type="sec" rid="Ch1.S3.SS3"/>) are multiplied by an envelope function, <inline-formula><mml:math id="M329" display="inline"><mml:mrow><mml:mi>f</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>, defined by
          <disp-formula id="App1.Ch1.S3.E55" content-type="numbered"><label>C1</label><mml:math id="M330" display="block"><mml:mrow><mml:mi>f</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mfenced close=")" open="("><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:mi>exp⁡</mml:mi><mml:mfenced open="(" close=")"><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mi>t</mml:mi><mml:mi mathvariant="italic">τ</mml:mi></mml:mfrac></mml:mstyle></mml:mfenced></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
        where <inline-formula><mml:math id="M331" display="inline"><mml:mi mathvariant="italic">τ</mml:mi></mml:math></inline-formula> is a characteristic timescale of the ramp-up constrained by <inline-formula><mml:math id="M332" display="inline"><mml:mrow><mml:mi mathvariant="italic">τ</mml:mi><mml:mo>≪</mml:mo><mml:mi>T</mml:mi></mml:mrow></mml:math></inline-formula> and set to <inline-formula><mml:math id="M333" display="inline"><mml:mrow><mml:mi mathvariant="italic">τ</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">5</mml:mn><mml:mn mathvariant="normal">100</mml:mn></mml:mfrac></mml:mstyle><mml:mi>T</mml:mi></mml:mrow></mml:math></inline-formula> in this study.</p>
</app>
  </app-group><notes notes-type="codedataavailability"><title>Code and data availability</title>

      <p id="d2e8750">All simulation output and data analysis scripts are publicly available as mandated by the research grant data management plan submitted to the US National Science Foundation. The web access link is <ext-link xlink:href="https://doi.org/10.7298/5vkw-0303" ext-link-type="DOI">10.7298/5vkw-0303</ext-link> <xref ref-type="bibr" rid="bib1.bibx32" id="paren.68"/>.</p>
  </notes><notes notes-type="authorcontribution"><title>Author contributions</title>

      <p id="d2e8762">PL: conceptualization, data curation, investigation, methodology, software, visualization and writing (original draft). PJD: conceptualization, funding acquisition, project administration, resources, supervision and writing (original draft). MS: conceptualization and writing (original draft). GNT: software and writing (review and editing).</p>
  </notes><notes notes-type="competinginterests"><title>Competing interests</title>

      <p id="d2e8768">The contact author has declared that none of the authors has any competing interests.</p>
  </notes><notes notes-type="disclaimer"><title>Disclaimer</title>

      <p id="d2e8774">Publisher's note: Copernicus Publications remains neutral with regard to jurisdictional claims made in the text, published maps, institutional affiliations, or any other geographical representation in this paper. While Copernicus Publications makes every effort to include appropriate place names, the final responsibility lies with the authors.</p>
  </notes><notes notes-type="sistatement"><title>Special issue statement</title>

      <p id="d2e8780">This article is part of the special issue “Turbulence, wave–current interactions, and other non-linear physical processes in lakes and oceans”. It is a result of the EGU General Assembly 2023 session NP6.1 Turbulence, wave-currents interactions and other non-linear physical processes in lakes and oceans, Vienna, Austria, 25 April 2023.</p>
  </notes><ack><title>Acknowledgements</title><p id="d2e8786">Financial support from National Science Foundation – Division of Ocean Sciences (OCE; grant no. 1948251) is gratefully acknowledged. This work used Anvil2 at Rosen Center for Advanced Computing through allocation no. EES200010 from the Advanced Cyberinfrastructure Coordination Ecosystem: Services &amp; Support (ACCESS) program, which is supported by the National Science Foundation (grant nos. 2138259, 2138286, 2138307, 2137603 and 2138296). Discussions on the generation and breaking of internal waves in internal swash zones with Edwin (Todd) Cowen, Erika McPhee Shaw and Seth Schweitzer are gratefully acknowledged.</p></ack><notes notes-type="financialsupport"><title>Financial support</title>

      <p id="d2e8791">This research has been supported by the National Science Foundation (grant no. 1948251).</p>
  </notes><notes notes-type="reviewstatement"><title>Review statement</title>

      <p id="d2e8797">This paper was edited by Kateryna Terletska and reviewed by two anonymous referees.</p>
  </notes><ref-list>
    <title>References</title>

      <ref id="bib1.bibx1"><label>Boegman(2009)</label><mixed-citation>Boegman, L.: Currents in Stratified Water Bodies 2: Internal Waves, in: Encyclopedia of Inland Waters, edited by: Likens, G. E., Academic Press, Oxford, 539–558, <ext-link xlink:href="https://doi.org/10.1016/B978-012370626-3.00081-8" ext-link-type="DOI">10.1016/B978-012370626-3.00081-8</ext-link>, 2009.</mixed-citation></ref>
      <ref id="bib1.bibx2"><label>Boegman and Ivey(2009)</label><mixed-citation>Boegman, L. and Ivey, G. N.: Flow separation and resuspension beneath shoaling nonlinear internal waves, J. Geophys. Res.-Oceans, 114, <ext-link xlink:href="https://doi.org/10.1029/2007JC004411" ext-link-type="DOI">10.1029/2007JC004411</ext-link>, 2009.</mixed-citation></ref>
      <ref id="bib1.bibx3"><label>Boegman and Stastna(2019)</label><mixed-citation> Boegman, L. and Stastna, M.: Sediment resuspension and transport by internal solitary waves, Annu. Rev. Fluid Mech., 51, 129–154, 2019.</mixed-citation></ref>
      <ref id="bib1.bibx4"><label>Boegman et al.(2005)Boegman, Ivey, and Imberger</label><mixed-citation>Boegman, L., Ivey, G., and Imberger, J.: The energetics of large-scale internal wave degeneration in lakes, J. Fluid Mech., 531, 159–180, <ext-link xlink:href="https://doi.org/10.1017/S0022112005003915" ext-link-type="DOI">10.1017/S0022112005003915</ext-link>, 2005.</mixed-citation></ref>
      <ref id="bib1.bibx5"><label>Boyd(2015)</label><mixed-citation>Boyd, J.: Dynamical Meteorology <inline-formula><mml:math id="M334" display="inline"><mml:mo>|</mml:mo></mml:math></inline-formula> Solitary Waves, in: Encyclopedia of Atmospheric Sciences, 2nd edn., edited by: North, G. R., Pyle, J., and Zhang, F., Academic Press, Oxford, 417–422, <ext-link xlink:href="https://doi.org/10.1016/B978-0-12-382225-3.00374-1" ext-link-type="DOI">10.1016/B978-0-12-382225-3.00374-1</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx6"><label>Canuto et al.(2007)Canuto, Hussaini, Quarteroni, and Zang</label><mixed-citation>Canuto, C., Hussaini, M., Quarteroni, A., and Zang, T.: Spectral Methods: Evolution to Complex Geometries and Applications to Fluid Dynamics, Scientific Computation, Springer Berlin Heidelberg, <ext-link xlink:href="https://doi.org/10.1007/978-3-540-30728-0" ext-link-type="DOI">10.1007/978-3-540-30728-0</ext-link>, 2007.</mixed-citation></ref>
      <ref id="bib1.bibx7"><label>Cheriton et al.(2016)Cheriton, Storlazzi, and Rosenberger</label><mixed-citation>Cheriton, O. M., Storlazzi, C. D., and Rosenberger, K. J.: Observations of wave transformation over a fringing coral reef and the importance of low-frequency waves and offshore water levels to runup, overwash, and coastal flooding, J. Geophys. Res.-Oceans, 121, 3121–3140, <ext-link xlink:href="https://doi.org/10.1002/2015JC011231" ext-link-type="DOI">10.1002/2015JC011231</ext-link>, 2016.</mixed-citation></ref>
      <ref id="bib1.bibx8"><label>Cowen et al.(2003)Cowen, Sou, Liu, and Raubenheimer</label><mixed-citation>Cowen, E. A., Sou, I. M., Liu, P. L.-F., and Raubenheimer, B.: Particle Image Velocimetry Measurements within a Laboratory-Generated Swash Zone, J. Eng. Mech., 129, 1119–1129, <ext-link xlink:href="https://doi.org/10.1061/(ASCE)0733-9399(2003)129:10(1119)" ext-link-type="DOI">10.1061/(ASCE)0733-9399(2003)129:10(1119)</ext-link>, 2003.</mixed-citation></ref>
      <ref id="bib1.bibx9"><label>Dauhajre et al.(2021)Dauhajre, Molemaker, McWilliams, and Hypolite</label><mixed-citation>Dauhajre, D. P., Molemaker, M. J., McWilliams, J. C., and Hypolite, D.: Effects of Stratification on Shoaling Internal Tidal Bores, J. Phys. Oceanogr., 51, 3183–3202, <ext-link xlink:href="https://doi.org/10.1175/JPO-D-21-0107.1" ext-link-type="DOI">10.1175/JPO-D-21-0107.1</ext-link>, 2021.</mixed-citation></ref>
      <ref id="bib1.bibx10"><label>Deville et al.(2002)Deville, Fischer, Mund et al.</label><mixed-citation>Deville, M. O., Fischer, P. F., and Mund, E.: High-order methods for incompressible fluid flow, vol. 9, Cambridge University Press, <ext-link xlink:href="https://doi.org/10.1115/1.1566402" ext-link-type="DOI">10.1115/1.1566402</ext-link>, 2002.</mixed-citation></ref>
      <ref id="bib1.bibx11"><label>Diamantopoulos et al.(2021)Diamantopoulos, Diamessis, and Stastna</label><mixed-citation>Diamantopoulos, T., Diamessis, P. J., and Stastna, M.: On the formulation and implementation of the stress-free boundary condition over deformed bathymetry using a spectral-element-method-based incompressible Navier–Stokes equations solver, Ocean Model., 165, 101834, <ext-link xlink:href="https://doi.org/10.1016/j.ocemod.2021.101834" ext-link-type="DOI">10.1016/j.ocemod.2021.101834</ext-link>, 2021.</mixed-citation></ref>
      <ref id="bib1.bibx12"><label>Diamantopoulos et al.(2022)Diamantopoulos, Joshi, Thomsen, Rivera-Rosario, Diamessis, and Rowe</label><mixed-citation>Diamantopoulos, T., Joshi, S. M., Thomsen, G. N., Rivera-Rosario, G., Diamessis, P. J., and Rowe, K. L.: A high accuracy/resolution spectral element/Fourier–Galerkin method for the simulation of shoaling non-linear internal waves and turbulence in long domains with variable bathymetry, Ocean Model., 176, 102065, <ext-link xlink:href="https://doi.org/10.1016/j.ocemod.2022.102065" ext-link-type="DOI">10.1016/j.ocemod.2022.102065</ext-link>, 2022.</mixed-citation></ref>
      <ref id="bib1.bibx13"><label>Dunphy et al.(2011)Dunphy, Subich, and Stastna</label><mixed-citation>Dunphy, M., Subich, C., and Stastna, M.: Spectral methods for internal waves: indistinguishable density profiles and double-humped solitary waves, Nonlin. Processes Geophys., 18, 351–358, <ext-link xlink:href="https://doi.org/10.5194/npg-18-351-2011" ext-link-type="DOI">10.5194/npg-18-351-2011</ext-link>, 2011.</mixed-citation></ref>
      <ref id="bib1.bibx14"><label>Dutt and Rokhlin(1993)</label><mixed-citation>Dutt, A. and Rokhlin, V.: Fast Fourier Transforms for Nonequispaced Data, SIAM J. Sci. Comput., 14, 1368–1393, <ext-link xlink:href="https://doi.org/10.1137/0914081" ext-link-type="DOI">10.1137/0914081</ext-link>, 1993.</mixed-citation></ref>
      <ref id="bib1.bibx15"><label>Elfrink and Baldock(2002)</label><mixed-citation>Elfrink, B. and Baldock, T.: Hydrodynamics and sediment transport in the swash zone: a review and perspectives, Coast. Eng., 45, 149–167, <ext-link xlink:href="https://doi.org/10.1016/S0378-3839(02)00032-7" ext-link-type="DOI">10.1016/S0378-3839(02)00032-7</ext-link>, 2002.</mixed-citation></ref>
      <ref id="bib1.bibx16"><label>Emery and Gunnerson(1973)</label><mixed-citation>Emery, K. O. and Gunnerson, C. G.: Internal Swash and Surf, P. Natl. Acad. Sci. USA, 70, 2379–2380, <ext-link xlink:href="https://doi.org/10.1073/pnas.70.8.2379" ext-link-type="DOI">10.1073/pnas.70.8.2379</ext-link>, 1973.</mixed-citation></ref>
      <ref id="bib1.bibx17"><label>Gear and Grimshaw(1983)</label><mixed-citation>Gear, J. A. and Grimshaw, R.: A second-order theory for solitary waves in shallow fluids, Phys. Fluids, 26, 14–29, <ext-link xlink:href="https://doi.org/10.1063/1.863994" ext-link-type="DOI">10.1063/1.863994</ext-link>, 1983.</mixed-citation></ref>
      <ref id="bib1.bibx18"><label>Gerkema and Zimmerman(2008)</label><mixed-citation>Gerkema, T. and Zimmerman, J.: An introduction to internal waves, Lecture Notes, Royal NIOZ, Texel, 207, <uri>https://scholar.google.com/scholar_lookup?journal=Lect.+Notes+R.+NIOZ+Texel&amp;title=An+introduction+to+internal+waves&amp;author=T+Gerkema&amp;author=J+Zimmerman&amp;volume=207&amp;publication_year=2008&amp;pages=207&amp;</uri> (last access: 11 April 2024), 2008.</mixed-citation></ref>
      <ref id="bib1.bibx19"><label>Ghassemi et al.(2022)Ghassemi, Zahedi, and Boegman</label><mixed-citation>Ghassemi, A., Zahedi, S., and Boegman, L.: Bolus formation from fission of nonlinear internal waves over a mild slope, J. Fluid Mech., 932, A50, <ext-link xlink:href="https://doi.org/10.1017/jfm.2021.1033" ext-link-type="DOI">10.1017/jfm.2021.1033</ext-link>, 2022.</mixed-citation></ref>
      <ref id="bib1.bibx20"><label>Gostiaux et al.(2006)Gostiaux, Didelle, Mercier, and Dauxois</label><mixed-citation>Gostiaux, L., Didelle, H., Mercier, S., and Dauxois, T.: A novel internal waves generator, Exp. Fluids, 42, 123–130, <ext-link xlink:href="https://doi.org/10.1007/s00348-006-0225-7" ext-link-type="DOI">10.1007/s00348-006-0225-7</ext-link>, 2006.</mixed-citation></ref>
      <ref id="bib1.bibx21"><label>Grace et al.(2019)Grace, Stastna, and Poulin</label><mixed-citation>Grace, A., Stastna, M., and Poulin, F. J.: Numerical simulations of the shear instability and subsequent degeneration of basin scale internal standing waves, Phys. Rev. Fluids, 4, 014802, <ext-link xlink:href="https://doi.org/10.1103/PhysRevFluids.4.014802" ext-link-type="DOI">10.1103/PhysRevFluids.4.014802</ext-link>, 2019.</mixed-citation></ref>
      <ref id="bib1.bibx22"><label>Hodges and Street(1999)</label><mixed-citation>Hodges, B. R. and Street, R. L.: On Simulation of Turbulent Nonlinear Free-Surface Flows, J. Comput. Phys., 151, 425–457, <ext-link xlink:href="https://doi.org/10.1006/jcph.1998.6166" ext-link-type="DOI">10.1006/jcph.1998.6166</ext-link>, 1999.</mixed-citation></ref>
      <ref id="bib1.bibx23"><label>Hosegood et al.(2004)Hosegood, Bonnin, and van Haren</label><mixed-citation>Hosegood, P., Bonnin, J., and van Haren, H.: Solibore-induced sediment resuspension in the Faeroe-Shetland Channel, Geophys. Res. Lett., 31, L09301, <ext-link xlink:href="https://doi.org/10.1029/2004GL019544" ext-link-type="DOI">10.1029/2004GL019544</ext-link>, 2004.</mixed-citation></ref>
      <ref id="bib1.bibx24"><label>Huismann et al.(2017)Huismann, Stiller, and Fröhlich</label><mixed-citation> Huismann, I., Stiller, J., and Fröhlich, J.: Factorizing the factorization–a spectral-element solver for elliptic equations with linear operation count, J. Comput. Phys., 346, 437–448, 2017.</mixed-citation></ref>
      <ref id="bib1.bibx25"><label>Karniadakis and Sherwin(2013)</label><mixed-citation>Karniadakis, G. and Sherwin, S.: Spectral/hp element methods for computational fluid dynamics, Oxford University Press, <ext-link xlink:href="https://doi.org/10.1093/acprof:oso/9780198528692.003.0001" ext-link-type="DOI">10.1093/acprof:oso/9780198528692.003.0001</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx26"><label>Karniadakis et al.(1991)Karniadakis, Israeli, and Orszag</label><mixed-citation> Karniadakis, G. E., Israeli, M., and Orszag, S. A.: High-order splitting methods for the incompressible Navier-Stokes equations, J. Comput. Phys., 97, 414–443, 1991.</mixed-citation></ref>
      <ref id="bib1.bibx27"><label>Kundu et al.(2015)Kundu, Cohen, and Dowling</label><mixed-citation> Kundu, P. K., Cohen, I. M., and Dowling, D.: Fluid Mechanics, 6th edn., Academic Press, ISBN 9780124059351, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx28"><label>Lamb(1998)</label><mixed-citation>Lamb, K. G.: Theoretical Descriptions of Shallow-Water Solitary Internal Waves: Comparisons with Fully Nonlinear Internal Waves, Presented at the WHOI/IOS/ONR Internal Solitary Wave Workshop, Woods Hole Oceanographic Institution, <uri>https://www.whoi.edu/science/AOPE/people/tduda/isww/text/lamb/kglamb_ht.html</uri> (last access: 11 April 2024), 1998.</mixed-citation></ref>
      <ref id="bib1.bibx29"><label>Lamb and Yan(1996)</label><mixed-citation> Lamb, K. G. and Yan, L.: The evolution of internal wave undular bores: comparisons of a fully nonlinear numerical model with weakly nonlinear theory, J. Phys. Oceanogr., 26, 2712–2734, 1996.</mixed-citation></ref>
      <ref id="bib1.bibx30"><label>Large et al.(1994)Large, McWilliams, and Doney</label><mixed-citation>Large, W. G., McWilliams, J. C., and Doney, S. C.: Oceanic vertical mixing: A review and a model with a nonlocal boundary layer parameterization, Rev. Geophys., 32, 363–403, <ext-link xlink:href="https://doi.org/10.1029/94RG01872" ext-link-type="DOI">10.1029/94RG01872</ext-link>, 1994.</mixed-citation></ref>
      <ref id="bib1.bibx31"><label>Lemckert and Imberger(1998)</label><mixed-citation>Lemckert, C. and Imberger, J.: Turbulent Benthic Boundary Layer Mixing Events in Fresh Water Lakes, Chap. 35, American Geophysical Union (AGU), 503–516, <ext-link xlink:href="https://doi.org/10.1029/CE054p0503" ext-link-type="DOI">10.1029/CE054p0503</ext-link>, 1998.</mixed-citation></ref>
      <ref id="bib1.bibx32"><label>Lloret et al.(2024)</label><mixed-citation>Lloret, P., Diamessis, P., Stastna, M., and Thomsen, G. N.: Data and scripts from: A robust numerical method for the generation and propagation of periodic finite-amplitude internal waves in natural waters using high-accuracy simulations, Cornell University Library eCommons Repository [data set], <ext-link xlink:href="https://doi.org/10.7298/5vkw-0303" ext-link-type="DOI">10.7298/5vkw-0303</ext-link>, 2024.</mixed-citation></ref>
      <ref id="bib1.bibx33"><label>Lucas and Pinkel(2022)</label><mixed-citation>Lucas, A. J. and Pinkel, R.: Observations of Coherent Transverse Wakes in Shoaling Nonlinear Internal Waves, J. Phys. Oceanogr., 52, 1277–1293, <ext-link xlink:href="https://doi.org/10.1175/JPO-D-21-0059.1" ext-link-type="DOI">10.1175/JPO-D-21-0059.1</ext-link>, 2022.</mixed-citation></ref>
      <ref id="bib1.bibx34"><label>Martini et al.(2013)Martini, Alford, Kunze, Kelly, and Nash</label><mixed-citation>Martini, K. I., Alford, M. H., Kunze, E., Kelly, S. M., and Nash, J. D.: Internal Bores and Breaking Internal Tides on the Oregon Continental Slope, J. Phys. Oceanogr., 43, 120–139, <ext-link xlink:href="https://doi.org/10.1175/JPO-D-12-030.1" ext-link-type="DOI">10.1175/JPO-D-12-030.1</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx35"><label>Masunaga et al.(2015)Masunaga, Homma, Yamazaki, Fringer, Nagai, Kitade, and Okayasu</label><mixed-citation>Masunaga, E., Homma, H., Yamazaki, H., Fringer, O. B., Nagai, T., Kitade, Y., and Okayasu, A.: Mixing and sediment resuspension associated with internal bores in a shallow bay, Cont. Shelf Res., 110, 85–99, <ext-link xlink:href="https://doi.org/10.1016/j.csr.2015.09.022" ext-link-type="DOI">10.1016/j.csr.2015.09.022</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx36"><label>Masunaga et al.(2016)Masunaga, Fringer, Yamazaki, and Amakasu</label><mixed-citation>Masunaga, E., Fringer, O. B., Yamazaki, H., and Amakasu, K.: Strong turbulent mixing induced by internal bores interacting with internal tide-driven vertically sheared flow, Geophys. Res. Lett., 43, 2094–2101, <ext-link xlink:href="https://doi.org/10.1002/2016GL067812" ext-link-type="DOI">10.1002/2016GL067812</ext-link>, 2016.</mixed-citation></ref>
      <ref id="bib1.bibx37"><label>McPhee-Shaw(2006)</label><mixed-citation>McPhee-Shaw, E.: Boundary–interior exchange: Reviewing the idea that internal-wave mixing enhances lateral dispersal near continental margins, Deep-Sea Res. Pt. II, 53, 42–59, <ext-link xlink:href="https://doi.org/10.1016/j.dsr2.2005.10.018" ext-link-type="DOI">10.1016/j.dsr2.2005.10.018</ext-link>, 2006.</mixed-citation></ref>
      <ref id="bib1.bibx38"><label>McPhee-Shaw and Kunze(2002)</label><mixed-citation>McPhee-Shaw, E. E. and Kunze, E.: Boundary layer intrusions from a sloping bottom: A mechanism for generating intermediate nepheloid layers, J. Geophys. Res.-Oceans, 107, 3050, <ext-link xlink:href="https://doi.org/10.1029/2001JC000801" ext-link-type="DOI">10.1029/2001JC000801</ext-link>, 2002.</mixed-citation></ref>
      <ref id="bib1.bibx39"><label>Mercier et al.(2010)Mercier, Martinand, Mathur, Gostiaux, Peacock, and Dauxois</label><mixed-citation>Mercier, M. J., Martinand, D., Mathur, M., Gostiaux, L., Peacock, T., and Dauxois, T.: New wave generation, J. Fluid Mech., 657, 308–334, <ext-link xlink:href="https://doi.org/10.1017/S0022112010002454" ext-link-type="DOI">10.1017/S0022112010002454</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bibx40"><label>Mercier et al.(2013)Mercier, Gostiaux, Helfrich, Sommeria, Viboud, Didelle, Ghaemsaidi, Dauxois, and Peacock</label><mixed-citation>Mercier, M. J., Gostiaux, L., Helfrich, K., Sommeria, J., Viboud, S., Didelle, H., Ghaemsaidi, S. J., Dauxois, T., and Peacock, T.: Large-scale, realistic laboratory modeling of M2 internal tide generation at the Luzon Strait, Geophys. Res. Lett., 40, 5704–5709, <ext-link xlink:href="https://doi.org/10.1002/2013GL058064" ext-link-type="DOI">10.1002/2013GL058064</ext-link>, 2013.</mixed-citation></ref>
      <ref id="bib1.bibx41"><label>Moore et al.(2016)Moore, Koseff, and Hult</label><mixed-citation>Moore, C. D., Koseff, J. R., and Hult, E. L.: Characteristics of bolus formation and propagation from breaking internal waves on shelf slopes, J. Fluid Mech., 791, 260–283, <ext-link xlink:href="https://doi.org/10.1017/jfm.2016.58" ext-link-type="DOI">10.1017/jfm.2016.58</ext-link>, 2016.</mixed-citation></ref>
      <ref id="bib1.bibx42"><label>Nakayama and Imberger(2010)</label><mixed-citation>Nakayama, K. and Imberger, J.: Residual circulation due to internal waves shoaling on a slope, Limnol. Oceanogr., 55, 1009–1023, <ext-link xlink:href="https://doi.org/10.4319/lo.2010.55.3.1009" ext-link-type="DOI">10.4319/lo.2010.55.3.1009</ext-link>, 2010.</mixed-citation></ref>
      <ref id="bib1.bibx43"><label>Nash et al.(2004)Nash, Kunze, Toole, and Schmitt</label><mixed-citation>Nash, J. D., Kunze, E., Toole, J. M., and Schmitt, R. W.: Internal Tide Reflection and Turbulent Mixing on the Continental Slope, J. Phys. Oceanogr., 34, 1117, <ext-link xlink:href="https://doi.org/10.1175/1520-0485(2004)034&lt;1117:ITRATM&gt;2.0.CO;2" ext-link-type="DOI">10.1175/1520-0485(2004)034&lt;1117:ITRATM&gt;2.0.CO;2</ext-link>, 2004.</mixed-citation></ref>
      <ref id="bib1.bibx44"><label>Omand et al.(2015)Omand, D'Asaro, Lee, Perry, Briggs, Cetinić, and Mahadevan</label><mixed-citation>Omand, M. M., D'Asaro, E. A., Lee, C. M., Perry, M. J., Briggs, N., Cetinić, I., and Mahadevan, A.: Eddy-driven subduction exports particulate organic carbon from the spring bloom, Science, 348, 222–225, <ext-link xlink:href="https://doi.org/10.1126/science.1260062" ext-link-type="DOI">10.1126/science.1260062</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx45"><label>Potter et al.(2017)Potter, Gumerov, and Duraiswami</label><mixed-citation>Potter, S. F., Gumerov, N. A., and Duraiswami, R.: Fast interpolation of bandlimited functions, in: 2017 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), 5–9 March 2017, New Orleans, Louisiana, 4516–4520, <ext-link xlink:href="https://doi.org/10.1109/ICASSP.2017.7953011" ext-link-type="DOI">10.1109/ICASSP.2017.7953011</ext-link>, 2017.</mixed-citation></ref>
      <ref id="bib1.bibx46"><label>Rogers et al.(2019)Rogers, Rayson, Ko, Winters, and Fringer</label><mixed-citation>Rogers, J. S., Rayson, M. D., Ko, D. S., Winters, K. B., and Fringer, O. B.: A framework for seamless one-way nesting of internal wave-resolving ocean models, Ocean Model., 143, 101462, <ext-link xlink:href="https://doi.org/10.1016/j.ocemod.2019.101462" ext-link-type="DOI">10.1016/j.ocemod.2019.101462</ext-link>, 2019.</mixed-citation></ref>
      <ref id="bib1.bibx47"><label>Schweitzer(2010)</label><mixed-citation>Schweitzer, S.: The Effects Of Runoff And Upwelling Events On The Water Quality Of The Southern Shelf Of Cayuga Lake, Master's thesis, Cornell University, <uri>https://hdl.handle.net/1813/17147</uri>, 2010.</mixed-citation></ref>
      <ref id="bib1.bibx48"><label>Schweitzer(2015)</label><mixed-citation>Schweitzer, S.: Physical Processes In A Long Narrow Deep Lake, PhD thesis, Cornell University, <uri>https://hdl.handle.net/1813/39404</uri>, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx49"><label>Stastna(2022)</label><mixed-citation> Stastna, M.: Internal Waves in the Ocean: Theory and Practice, vol. 9, Springer Nature, ISBN 978-3030992095, 2022.</mixed-citation></ref>
      <ref id="bib1.bibx50"><label>Stevens et al.(2005)Stevens, Abraham, Moore, Boyd, and Sharples</label><mixed-citation>Stevens, C. L., Abraham, E. R., Moore, C. M., Boyd, P. W., and Sharples, J.: Observations of Small-Scale Processes Associated with the Internal Tide Encountering an Island, J. Phys. Oceanogr., 35, 1553–1567, <ext-link xlink:href="https://doi.org/10.1175/JPO2754.1" ext-link-type="DOI">10.1175/JPO2754.1</ext-link>, 2005.</mixed-citation></ref>
      <ref id="bib1.bibx51"><label>Taylor(1993)</label><mixed-citation>Taylor, J. R.: Turbulence and mixing in the boundary layer generated by shoaling internal waves, Dynam. Atmos. Oceans, 19, 233–258, <ext-link xlink:href="https://doi.org/10.1016/0377-0265(93)90038-9" ext-link-type="DOI">10.1016/0377-0265(93)90038-9</ext-link>, 1993.</mixed-citation></ref>
      <ref id="bib1.bibx52"><label>Thorpe(1998)</label><mixed-citation> Thorpe, S.: Some dynamical effects of internal waves and the sloping sides of lakes, Coast. Estuar. Stud., 54, 441–460, 1998.</mixed-citation></ref>
      <ref id="bib1.bibx53"><label>Thorpe et al.(1996)Thorpe, Keen, Jiang, and Lemmin</label><mixed-citation> Thorpe, S. A., Keen, J. M., Jiang, R., and Lemmin, U.: High-Frequency Internal Waves in Lake Geneva, Philos. T. Roy. Soc. A, 354, 237–257, 1996.</mixed-citation></ref>
      <ref id="bib1.bibx54"><label>Ting and Kirby(1996)</label><mixed-citation>Ting, F. C. and Kirby, J. T.: Dynamics of surf-zone turbulence in a spilling breaker, Coast. Eng., 27, 131–160, <ext-link xlink:href="https://doi.org/10.1016/0378-3839(95)00037-2" ext-link-type="DOI">10.1016/0378-3839(95)00037-2</ext-link>, 1996.</mixed-citation></ref>
      <ref id="bib1.bibx55"><label>Turkington et al.(1991)Turkington, Eydeland, and Wang</label><mixed-citation>Turkington, B., Eydeland, A., and Wang, S.: A Computational Method for Solitary Internal Waves in a Continuously Stratified Fluid, Stud. Appl. Math., 85, 93–127, <ext-link xlink:href="https://doi.org/10.1002/sapm199185293" ext-link-type="DOI">10.1002/sapm199185293</ext-link>, 1991.</mixed-citation></ref>
      <ref id="bib1.bibx56"><label>Wallace and Wilkinson(1988)</label><mixed-citation>Wallace, B. C. and Wilkinson, D. L.: Run-up of internal waves on a gentle slope in a two-layered system, J. Fluid Mech., 191, 419–442, <ext-link xlink:href="https://doi.org/10.1017/S0022112088001636" ext-link-type="DOI">10.1017/S0022112088001636</ext-link>, 1988.</mixed-citation></ref>
      <ref id="bib1.bibx57"><label>Walter et al.(2012)Walter, Woodson, Arthur, Fringer, and Monismith</label><mixed-citation>Walter, R. K., Woodson, C. B., Arthur, R. S., Fringer, O. B., and Monismith, S. G.: Nearshore internal bores and turbulent mixing in southern Monterey Bay, J. Geophys. Res.-Oceans, 117, C07017, <ext-link xlink:href="https://doi.org/10.1029/2012JC008115" ext-link-type="DOI">10.1029/2012JC008115</ext-link>, 2012.</mixed-citation></ref>
      <ref id="bib1.bibx58"><label>Winters(2015)</label><mixed-citation>Winters, K. B.: Tidally driven mixing and dissipation in the stratified boundary layer above steep submarine topography, Geophys. Res. Lett., 42, 7123–7130, <ext-link xlink:href="https://doi.org/10.1002/2015GL064676" ext-link-type="DOI">10.1002/2015GL064676</ext-link>, 2015.</mixed-citation></ref>
      <ref id="bib1.bibx59"><label>Woodson(2018)</label><mixed-citation>Woodson, C.: The Fate and Impact of Internal Waves in Nearshore Ecosystems, Annu. Rev. Mar. Sci., 10, 421–441, <ext-link xlink:href="https://doi.org/10.1146/annurev-marine-121916-063619" ext-link-type="DOI">10.1146/annurev-marine-121916-063619</ext-link>, 2018. </mixed-citation></ref>
      <ref id="bib1.bibx60"><label>Wuest and Lorke(2003)</label><mixed-citation>Wuest, A. and Lorke, A.: Small-scale hydrodynamics in lakes, Annu. Rev. Fluid Mech., 35, 373–412, <ext-link xlink:href="https://doi.org/10.1146/annurev.fluid.35.101101.161220" ext-link-type="DOI">10.1146/annurev.fluid.35.101101.161220</ext-link>, 2003.</mixed-citation></ref>
      <ref id="bib1.bibx61"><label>Yih(1977)</label><mixed-citation> Yih, C.-S.: Fluid Mechanics – A concise introduction to the theory, University of Michigan, West River Press, Michigan, USA, Card Number 78-65697, ISBN 978-0960219001, 1977.</mixed-citation></ref>
      <ref id="bib1.bibx62"><label>Zulberti et al.(2022)Zulberti, Jones, Rayson, and Ivey</label><mixed-citation>Zulberti, A. P., Jones, N. L., Rayson, M. D., and Ivey, G. N.: Mean and Turbulent Characteristics of a Bottom Mixing-Layer Forced by a Strong Surface Tide and Large Amplitude Internal Waves, J. Geophys. Res.-Oceans, 127, e2020JC017055, <ext-link xlink:href="https://doi.org/10.1029/2020JC017055" ext-link-type="DOI">10.1029/2020JC017055</ext-link>, 2022.</mixed-citation></ref>

  </ref-list></back>
    <!--<article-title-html>A robust numerical method for the generation and propagation of periodic finite-amplitude internal waves in natural waters using high-accuracy simulations</article-title-html>
<abstract-html/>
<ref-html id="bib1.bib1"><label>Boegman(2009)</label><mixed-citation>
      
Boegman, L.:
Currents in Stratified Water Bodies 2: Internal Waves, in: Encyclopedia of Inland Waters, edited by: Likens, G. E., Academic Press, Oxford, 539–558, <a href="https://doi.org/10.1016/B978-012370626-3.00081-8" target="_blank">https://doi.org/10.1016/B978-012370626-3.00081-8</a>, 2009.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib2"><label>Boegman and Ivey(2009)</label><mixed-citation>
      
Boegman, L. and Ivey, G. N.:
Flow separation and resuspension beneath shoaling nonlinear internal waves, J. Geophys. Res.-Oceans, 114, <a href="https://doi.org/10.1029/2007JC004411" target="_blank">https://doi.org/10.1029/2007JC004411</a>, 2009.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib3"><label>Boegman and Stastna(2019)</label><mixed-citation>
      
Boegman, L. and Stastna, M.:
Sediment resuspension and transport by internal solitary waves, Annu. Rev. Fluid Mech., 51, 129–154, 2019.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib4"><label>Boegman et al.(2005)Boegman, Ivey, and Imberger</label><mixed-citation>
      
Boegman, L., Ivey, G., and Imberger, J.:
The energetics of large-scale internal wave degeneration in lakes, J. Fluid Mech., 531, 159–180, <a href="https://doi.org/10.1017/S0022112005003915" target="_blank">https://doi.org/10.1017/S0022112005003915</a>, 2005.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib5"><label>Boyd(2015)</label><mixed-citation>
      
Boyd, J.:
Dynamical Meteorology | Solitary Waves, in: Encyclopedia of Atmospheric Sciences, 2nd edn., edited by: North, G. R., Pyle, J., and Zhang, F., Academic Press, Oxford, 417–422, <a href="https://doi.org/10.1016/B978-0-12-382225-3.00374-1" target="_blank">https://doi.org/10.1016/B978-0-12-382225-3.00374-1</a>, 2015.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib6"><label>Canuto et al.(2007)Canuto, Hussaini, Quarteroni, and Zang</label><mixed-citation>
      
Canuto, C., Hussaini, M., Quarteroni, A., and Zang, T.:
Spectral Methods: Evolution to Complex Geometries and Applications to Fluid Dynamics, Scientific Computation, Springer Berlin Heidelberg, <a href="https://doi.org/10.1007/978-3-540-30728-0" target="_blank">https://doi.org/10.1007/978-3-540-30728-0</a>, 2007.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib7"><label>Cheriton et al.(2016)Cheriton, Storlazzi, and Rosenberger</label><mixed-citation>
      
Cheriton, O. M., Storlazzi, C. D., and Rosenberger, K. J.:
Observations of wave transformation over a fringing coral reef and the importance of low-frequency waves and offshore water levels to runup, overwash, and coastal flooding, J. Geophys. Res.-Oceans, 121, 3121–3140, <a href="https://doi.org/10.1002/2015JC011231" target="_blank">https://doi.org/10.1002/2015JC011231</a>, 2016.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib8"><label>Cowen et al.(2003)Cowen, Sou, Liu, and Raubenheimer</label><mixed-citation>
      
Cowen, E. A., Sou, I. M., Liu, P. L.-F., and Raubenheimer, B.:
Particle Image Velocimetry Measurements within a Laboratory-Generated Swash Zone, J. Eng. Mech., 129, 1119–1129, <a href="https://doi.org/10.1061/(ASCE)0733-9399(2003)129:10(1119)" target="_blank">https://doi.org/10.1061/(ASCE)0733-9399(2003)129:10(1119)</a>, 2003.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib9"><label>Dauhajre et al.(2021)Dauhajre, Molemaker, McWilliams, and Hypolite</label><mixed-citation>
      
Dauhajre, D. P., Molemaker, M. J., McWilliams, J. C., and Hypolite, D.:
Effects of Stratification on Shoaling Internal Tidal Bores, J. Phys. Oceanogr., 51, 3183–3202, <a href="https://doi.org/10.1175/JPO-D-21-0107.1" target="_blank">https://doi.org/10.1175/JPO-D-21-0107.1</a>, 2021.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib10"><label>Deville et al.(2002)Deville, Fischer, Mund et al.</label><mixed-citation>
      
Deville, M. O., Fischer, P. F., and Mund, E.:
High-order methods for incompressible fluid flow, vol. 9, Cambridge University Press, <a href="https://doi.org/10.1115/1.1566402" target="_blank">https://doi.org/10.1115/1.1566402</a>, 2002.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib11"><label>Diamantopoulos et al.(2021)Diamantopoulos, Diamessis, and Stastna</label><mixed-citation>
      
Diamantopoulos, T., Diamessis, P. J., and Stastna, M.:
On the formulation and implementation of the stress-free boundary condition over deformed bathymetry using a spectral-element-method-based incompressible Navier–Stokes equations solver, Ocean Model., 165, 101834, <a href="https://doi.org/10.1016/j.ocemod.2021.101834" target="_blank">https://doi.org/10.1016/j.ocemod.2021.101834</a>, 2021.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib12"><label>Diamantopoulos et al.(2022)Diamantopoulos, Joshi, Thomsen, Rivera-Rosario, Diamessis, and Rowe</label><mixed-citation>
      
Diamantopoulos, T., Joshi, S. M., Thomsen, G. N., Rivera-Rosario, G., Diamessis, P. J., and Rowe, K. L.:
A high accuracy/resolution spectral element/Fourier–Galerkin method for the simulation of shoaling non-linear internal waves and turbulence in long domains with variable bathymetry, Ocean Model., 176, 102065, <a href="https://doi.org/10.1016/j.ocemod.2022.102065" target="_blank">https://doi.org/10.1016/j.ocemod.2022.102065</a>, 2022.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib13"><label>Dunphy et al.(2011)Dunphy, Subich, and Stastna</label><mixed-citation>
      
Dunphy, M., Subich, C., and Stastna, M.:
Spectral methods for internal waves: indistinguishable density profiles and double-humped solitary waves, Nonlin. Processes Geophys., 18, 351–358, <a href="https://doi.org/10.5194/npg-18-351-2011" target="_blank">https://doi.org/10.5194/npg-18-351-2011</a>, 2011.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib14"><label>Dutt and Rokhlin(1993)</label><mixed-citation>
      
Dutt, A. and Rokhlin, V.:
Fast Fourier Transforms for Nonequispaced Data, SIAM J. Sci. Comput., 14, 1368–1393, <a href="https://doi.org/10.1137/0914081" target="_blank">https://doi.org/10.1137/0914081</a>, 1993.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib15"><label>Elfrink and Baldock(2002)</label><mixed-citation>
      
Elfrink, B. and Baldock, T.:
Hydrodynamics and sediment transport in the swash zone: a review and perspectives, Coast. Eng., 45, 149–167, <a href="https://doi.org/10.1016/S0378-3839(02)00032-7" target="_blank">https://doi.org/10.1016/S0378-3839(02)00032-7</a>, 2002.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib16"><label>Emery and Gunnerson(1973)</label><mixed-citation>
      
Emery, K. O. and Gunnerson, C. G.:
Internal Swash and Surf, P. Natl. Acad. Sci. USA, 70, 2379–2380, <a href="https://doi.org/10.1073/pnas.70.8.2379" target="_blank">https://doi.org/10.1073/pnas.70.8.2379</a>, 1973.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib17"><label>Gear and Grimshaw(1983)</label><mixed-citation>
      
Gear, J. A. and Grimshaw, R.:
A second-order theory for solitary waves in shallow fluids, Phys. Fluids, 26, 14–29, <a href="https://doi.org/10.1063/1.863994" target="_blank">https://doi.org/10.1063/1.863994</a>, 1983.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib18"><label>Gerkema and Zimmerman(2008)</label><mixed-citation>
      
Gerkema, T. and Zimmerman, J.:
An introduction to internal waves, Lecture Notes, Royal NIOZ, Texel, 207, <a href="https://scholar.google.com/scholar_lookup?journal=Lect.+Notes+R.+NIOZ+Texel&amp;title=An+introduction+to+internal+waves&amp;author=T+Gerkema&amp;author=J+Zimmerman&amp;volume=207&amp;publication_year=2008&amp;pages=207&amp;" target="_blank"/> (last access: 11 April 2024), 2008.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib19"><label>Ghassemi et al.(2022)Ghassemi, Zahedi, and Boegman</label><mixed-citation>
      
Ghassemi, A., Zahedi, S., and Boegman, L.:
Bolus formation from fission of nonlinear internal waves over a mild slope, J. Fluid Mech., 932, A50, <a href="https://doi.org/10.1017/jfm.2021.1033" target="_blank">https://doi.org/10.1017/jfm.2021.1033</a>, 2022.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib20"><label>Gostiaux et al.(2006)Gostiaux, Didelle, Mercier, and Dauxois</label><mixed-citation>
      
Gostiaux, L., Didelle, H., Mercier, S., and Dauxois, T.:
A novel internal waves generator, Exp. Fluids, 42, 123–130, <a href="https://doi.org/10.1007/s00348-006-0225-7" target="_blank">https://doi.org/10.1007/s00348-006-0225-7</a>, 2006.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib21"><label>Grace et al.(2019)Grace, Stastna, and Poulin</label><mixed-citation>
      
Grace, A., Stastna, M., and Poulin, F. J.:
Numerical simulations of the shear instability and subsequent degeneration of basin scale internal standing waves, Phys. Rev. Fluids, 4, 014802, <a href="https://doi.org/10.1103/PhysRevFluids.4.014802" target="_blank">https://doi.org/10.1103/PhysRevFluids.4.014802</a>, 2019.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib22"><label>Hodges and Street(1999)</label><mixed-citation>
      
Hodges, B. R. and Street, R. L.:
On Simulation of Turbulent Nonlinear Free-Surface Flows, J. Comput. Phys., 151, 425–457, <a href="https://doi.org/10.1006/jcph.1998.6166" target="_blank">https://doi.org/10.1006/jcph.1998.6166</a>, 1999.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib23"><label>Hosegood et al.(2004)Hosegood, Bonnin, and van Haren</label><mixed-citation>
      
Hosegood, P., Bonnin, J., and van Haren, H.:
Solibore-induced sediment resuspension in the Faeroe-Shetland Channel, Geophys. Res. Lett., 31, L09301, <a href="https://doi.org/10.1029/2004GL019544" target="_blank">https://doi.org/10.1029/2004GL019544</a>, 2004.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib24"><label>Huismann et al.(2017)Huismann, Stiller, and Fröhlich</label><mixed-citation>
      
Huismann, I., Stiller, J., and Fröhlich, J.:
Factorizing the factorization–a spectral-element solver for elliptic equations with linear operation count, J. Comput. Phys., 346, 437–448, 2017.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib25"><label>Karniadakis and Sherwin(2013)</label><mixed-citation>
      
Karniadakis, G. and Sherwin, S.:
Spectral/hp element methods for computational fluid dynamics, Oxford University Press, <a href="https://doi.org/10.1093/acprof:oso/9780198528692.003.0001" target="_blank">https://doi.org/10.1093/acprof:oso/9780198528692.003.0001</a>, 2013.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib26"><label>Karniadakis et al.(1991)Karniadakis, Israeli, and Orszag</label><mixed-citation>
      
Karniadakis, G. E., Israeli, M., and Orszag, S. A.:
High-order splitting methods for the incompressible Navier-Stokes equations, J. Comput. Phys., 97, 414–443, 1991.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib27"><label>Kundu et al.(2015)Kundu, Cohen, and Dowling</label><mixed-citation>
      
Kundu, P. K., Cohen, I. M., and Dowling, D.:
Fluid Mechanics, 6th edn., Academic Press, ISBN 9780124059351, 2015.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib28"><label>Lamb(1998)</label><mixed-citation>
      
Lamb, K. G.:
Theoretical Descriptions of Shallow-Water Solitary Internal Waves: Comparisons with Fully Nonlinear Internal Waves, Presented at the WHOI/IOS/ONR Internal Solitary Wave Workshop, Woods Hole Oceanographic Institution, <a href="https://www.whoi.edu/science/AOPE/people/tduda/isww/text/lamb/kglamb_ht.html" target="_blank"/> (last access: 11 April 2024), 1998.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib29"><label>Lamb and Yan(1996)</label><mixed-citation>
      
Lamb, K. G. and Yan, L.:
The evolution of internal wave undular bores: comparisons of a fully nonlinear numerical model with weakly nonlinear theory, J. Phys. Oceanogr., 26, 2712–2734, 1996.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib30"><label>Large et al.(1994)Large, McWilliams, and Doney</label><mixed-citation>
      
Large, W. G., McWilliams, J. C., and Doney, S. C.:
Oceanic vertical mixing: A review and a model with a nonlocal boundary layer parameterization, Rev. Geophys., 32, 363–403, <a href="https://doi.org/10.1029/94RG01872" target="_blank">https://doi.org/10.1029/94RG01872</a>, 1994.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib31"><label>Lemckert and Imberger(1998)</label><mixed-citation>
      
Lemckert, C. and Imberger, J.:
Turbulent Benthic Boundary Layer Mixing Events in Fresh Water Lakes, Chap. 35, American Geophysical Union (AGU), 503–516, <a href="https://doi.org/10.1029/CE054p0503" target="_blank">https://doi.org/10.1029/CE054p0503</a>, 1998.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib32"><label>Lloret et al.(2024)</label><mixed-citation>
      
Lloret, P., Diamessis, P., Stastna, M., and Thomsen, G. N.: Data and scripts from: A robust numerical method for the generation and propagation of periodic finite-amplitude internal waves in natural waters using high-accuracy simulations, Cornell University Library eCommons Repository [data set], <a href="https://doi.org/10.7298/5vkw-0303" target="_blank">https://doi.org/10.7298/5vkw-0303</a>, 2024.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib33"><label>Lucas and Pinkel(2022)</label><mixed-citation>
      
Lucas, A. J. and Pinkel, R.:
Observations of Coherent Transverse Wakes in Shoaling Nonlinear Internal Waves, J. Phys. Oceanogr., 52, 1277–1293, <a href="https://doi.org/10.1175/JPO-D-21-0059.1" target="_blank">https://doi.org/10.1175/JPO-D-21-0059.1</a>, 2022.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib34"><label>Martini et al.(2013)Martini, Alford, Kunze, Kelly, and Nash</label><mixed-citation>
      
Martini, K. I., Alford, M. H., Kunze, E., Kelly, S. M., and Nash, J. D.:
Internal Bores and Breaking Internal Tides on the Oregon Continental Slope, J. Phys. Oceanogr., 43, 120–139, <a href="https://doi.org/10.1175/JPO-D-12-030.1" target="_blank">https://doi.org/10.1175/JPO-D-12-030.1</a>, 2013.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib35"><label>Masunaga et al.(2015)Masunaga, Homma, Yamazaki, Fringer, Nagai, Kitade, and Okayasu</label><mixed-citation>
      
Masunaga, E., Homma, H., Yamazaki, H., Fringer, O. B., Nagai, T., Kitade, Y., and Okayasu, A.:
Mixing and sediment resuspension associated with internal bores in a shallow bay, Cont. Shelf Res., 110, 85–99, <a href="https://doi.org/10.1016/j.csr.2015.09.022" target="_blank">https://doi.org/10.1016/j.csr.2015.09.022</a>, 2015.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib36"><label>Masunaga et al.(2016)Masunaga, Fringer, Yamazaki, and Amakasu</label><mixed-citation>
      
Masunaga, E., Fringer, O. B., Yamazaki, H., and Amakasu, K.:
Strong turbulent mixing induced by internal bores interacting with internal tide-driven vertically sheared flow, Geophys. Res. Lett., 43, 2094–2101, <a href="https://doi.org/10.1002/2016GL067812" target="_blank">https://doi.org/10.1002/2016GL067812</a>, 2016.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib37"><label>McPhee-Shaw(2006)</label><mixed-citation>
      
McPhee-Shaw, E.:
Boundary–interior exchange: Reviewing the idea that internal-wave mixing enhances lateral dispersal near continental margins, Deep-Sea Res. Pt. II, 53, 42–59, <a href="https://doi.org/10.1016/j.dsr2.2005.10.018" target="_blank">https://doi.org/10.1016/j.dsr2.2005.10.018</a>, 2006.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib38"><label>McPhee-Shaw and Kunze(2002)</label><mixed-citation>
      
McPhee-Shaw, E. E. and Kunze, E.:
Boundary layer intrusions from a sloping bottom: A mechanism for generating intermediate nepheloid layers, J. Geophys. Res.-Oceans, 107, 3050, <a href="https://doi.org/10.1029/2001JC000801" target="_blank">https://doi.org/10.1029/2001JC000801</a>, 2002.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib39"><label>Mercier et al.(2010)Mercier, Martinand, Mathur, Gostiaux, Peacock, and Dauxois</label><mixed-citation>
      
Mercier, M. J., Martinand, D., Mathur, M., Gostiaux, L., Peacock, T., and Dauxois, T.:
New wave generation, J. Fluid Mech., 657, 308–334, <a href="https://doi.org/10.1017/S0022112010002454" target="_blank">https://doi.org/10.1017/S0022112010002454</a>, 2010.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib40"><label>Mercier et al.(2013)Mercier, Gostiaux, Helfrich, Sommeria, Viboud, Didelle, Ghaemsaidi, Dauxois, and Peacock</label><mixed-citation>
      
Mercier, M. J., Gostiaux, L., Helfrich, K., Sommeria, J., Viboud, S., Didelle, H., Ghaemsaidi, S. J., Dauxois, T., and Peacock, T.:
Large-scale, realistic laboratory modeling of M2 internal tide generation at the Luzon Strait, Geophys. Res. Lett., 40, 5704–5709, <a href="https://doi.org/10.1002/2013GL058064" target="_blank">https://doi.org/10.1002/2013GL058064</a>, 2013.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib41"><label>Moore et al.(2016)Moore, Koseff, and Hult</label><mixed-citation>
      
Moore, C. D., Koseff, J. R., and Hult, E. L.:
Characteristics of bolus formation and propagation from breaking internal waves on shelf slopes, J. Fluid Mech., 791, 260–283, <a href="https://doi.org/10.1017/jfm.2016.58" target="_blank">https://doi.org/10.1017/jfm.2016.58</a>, 2016.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib42"><label>Nakayama and Imberger(2010)</label><mixed-citation>
      
Nakayama, K. and Imberger, J.:
Residual circulation due to internal waves shoaling on a slope, Limnol. Oceanogr., 55, 1009–1023, <a href="https://doi.org/10.4319/lo.2010.55.3.1009" target="_blank">https://doi.org/10.4319/lo.2010.55.3.1009</a>, 2010.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib43"><label>Nash et al.(2004)Nash, Kunze, Toole, and Schmitt</label><mixed-citation>
      
Nash, J. D., Kunze, E., Toole, J. M., and Schmitt, R. W.:
Internal Tide Reflection and Turbulent Mixing on the Continental Slope, J. Phys. Oceanogr., 34, 1117, <a href="https://doi.org/10.1175/1520-0485(2004)034&lt;1117:ITRATM&gt;2.0.CO;2" target="_blank">https://doi.org/10.1175/1520-0485(2004)034&lt;1117:ITRATM&gt;2.0.CO;2</a>, 2004.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib44"><label>Omand et al.(2015)Omand, D'Asaro, Lee, Perry, Briggs, Cetinić, and Mahadevan</label><mixed-citation>
      
Omand, M. M., D'Asaro, E. A., Lee, C. M., Perry, M. J., Briggs, N., Cetinić, I., and Mahadevan, A.:
Eddy-driven subduction exports particulate organic carbon from the spring bloom, Science, 348, 222–225, <a href="https://doi.org/10.1126/science.1260062" target="_blank">https://doi.org/10.1126/science.1260062</a>, 2015.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib45"><label>Potter et al.(2017)Potter, Gumerov, and Duraiswami</label><mixed-citation>
      
Potter, S. F., Gumerov, N. A., and Duraiswami, R.:
Fast interpolation of bandlimited functions, in: 2017 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), 5–9 March 2017, New Orleans, Louisiana, 4516–4520, <a href="https://doi.org/10.1109/ICASSP.2017.7953011" target="_blank">https://doi.org/10.1109/ICASSP.2017.7953011</a>, 2017.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib46"><label>Rogers et al.(2019)Rogers, Rayson, Ko, Winters, and Fringer</label><mixed-citation>
      
Rogers, J. S., Rayson, M. D., Ko, D. S., Winters, K. B., and Fringer, O. B.:
A framework for seamless one-way nesting of internal wave-resolving ocean models, Ocean Model., 143, 101462, <a href="https://doi.org/10.1016/j.ocemod.2019.101462" target="_blank">https://doi.org/10.1016/j.ocemod.2019.101462</a>, 2019.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib47"><label>Schweitzer(2010)</label><mixed-citation>
      
Schweitzer, S.:
The Effects Of Runoff And Upwelling Events On The Water Quality Of The Southern Shelf Of Cayuga Lake, Master's thesis, Cornell University, <a href="https://hdl.handle.net/1813/17147" target="_blank"/>, 2010.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib48"><label>Schweitzer(2015)</label><mixed-citation>
      
Schweitzer, S.:
Physical Processes In A Long Narrow Deep Lake, PhD thesis, Cornell University, <a href="https://hdl.handle.net/1813/39404" target="_blank"/>, 2015.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib49"><label>Stastna(2022)</label><mixed-citation>
      
Stastna, M.:
Internal Waves in the Ocean: Theory and Practice, vol. 9, Springer Nature, ISBN 978-3030992095, 2022.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib50"><label>Stevens et al.(2005)Stevens, Abraham, Moore, Boyd, and Sharples</label><mixed-citation>
      
Stevens, C. L., Abraham, E. R., Moore, C. M., Boyd, P. W., and Sharples, J.:
Observations of Small-Scale Processes Associated with the Internal Tide Encountering an Island, J. Phys. Oceanogr., 35, 1553–1567, <a href="https://doi.org/10.1175/JPO2754.1" target="_blank">https://doi.org/10.1175/JPO2754.1</a>, 2005.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib51"><label>Taylor(1993)</label><mixed-citation>
      
Taylor, J. R.:
Turbulence and mixing in the boundary layer generated by shoaling internal waves, Dynam. Atmos. Oceans, 19, 233–258, <a href="https://doi.org/10.1016/0377-0265(93)90038-9" target="_blank">https://doi.org/10.1016/0377-0265(93)90038-9</a>, 1993.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib52"><label>Thorpe(1998)</label><mixed-citation>
      
Thorpe, S.:
Some dynamical effects of internal waves and the sloping sides of lakes, Coast. Estuar. Stud., 54, 441–460, 1998.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib53"><label>Thorpe et al.(1996)Thorpe, Keen, Jiang, and Lemmin</label><mixed-citation>
      
Thorpe, S. A., Keen, J. M., Jiang, R., and Lemmin, U.:
High-Frequency Internal Waves in Lake Geneva, Philos. T. Roy. Soc. A, 354, 237–257, 1996.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib54"><label>Ting and Kirby(1996)</label><mixed-citation>
      
Ting, F. C. and Kirby, J. T.:
Dynamics of surf-zone turbulence in a spilling breaker, Coast. Eng., 27, 131–160, <a href="https://doi.org/10.1016/0378-3839(95)00037-2" target="_blank">https://doi.org/10.1016/0378-3839(95)00037-2</a>, 1996.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib55"><label>Turkington et al.(1991)Turkington, Eydeland, and Wang</label><mixed-citation>
      
Turkington, B., Eydeland, A., and Wang, S.:
A Computational Method for Solitary Internal Waves in a Continuously Stratified Fluid, Stud. Appl. Math., 85, 93–127, <a href="https://doi.org/10.1002/sapm199185293" target="_blank">https://doi.org/10.1002/sapm199185293</a>, 1991.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib56"><label>Wallace and Wilkinson(1988)</label><mixed-citation>
      
Wallace, B. C. and Wilkinson, D. L.:
Run-up of internal waves on a gentle slope in a two-layered system, J. Fluid Mech., 191, 419–442, <a href="https://doi.org/10.1017/S0022112088001636" target="_blank">https://doi.org/10.1017/S0022112088001636</a>, 1988.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib57"><label>Walter et al.(2012)Walter, Woodson, Arthur, Fringer, and Monismith</label><mixed-citation>
      
Walter, R. K., Woodson, C. B., Arthur, R. S., Fringer, O. B., and Monismith, S. G.:
Nearshore internal bores and turbulent mixing in southern Monterey Bay, J. Geophys. Res.-Oceans, 117, C07017, <a href="https://doi.org/10.1029/2012JC008115" target="_blank">https://doi.org/10.1029/2012JC008115</a>, 2012.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib58"><label>Winters(2015)</label><mixed-citation>
      
Winters, K. B.:
Tidally driven mixing and dissipation in the stratified boundary layer above steep submarine topography, Geophys. Res. Lett., 42, 7123–7130, <a href="https://doi.org/10.1002/2015GL064676" target="_blank">https://doi.org/10.1002/2015GL064676</a>, 2015.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib59"><label>Woodson(2018)</label><mixed-citation>
      
Woodson, C.:
The Fate and Impact of Internal Waves in Nearshore Ecosystems, Annu. Rev. Mar. Sci., 10, 421–441, <a href="https://doi.org/10.1146/annurev-marine-121916-063619" target="_blank">https://doi.org/10.1146/annurev-marine-121916-063619</a>, 2018.


    </mixed-citation></ref-html>
<ref-html id="bib1.bib60"><label>Wuest and Lorke(2003)</label><mixed-citation>
      
Wuest, A. and Lorke, A.:
Small-scale hydrodynamics in lakes, Annu. Rev. Fluid Mech., 35, 373–412, <a href="https://doi.org/10.1146/annurev.fluid.35.101101.161220" target="_blank">https://doi.org/10.1146/annurev.fluid.35.101101.161220</a>, 2003.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib61"><label>Yih(1977)</label><mixed-citation>
      
Yih, C.-S.:
Fluid Mechanics – A concise introduction to the theory, University of Michigan, West River Press, Michigan, USA, Card Number 78-65697, ISBN 978-0960219001, 1977.

    </mixed-citation></ref-html>
<ref-html id="bib1.bib62"><label>Zulberti et al.(2022)Zulberti, Jones, Rayson, and Ivey</label><mixed-citation>
      
Zulberti, A. P., Jones, N. L., Rayson, M. D., and Ivey, G. N.:
Mean and Turbulent Characteristics of a Bottom Mixing-Layer Forced by a Strong Surface Tide and Large Amplitude Internal Waves, J. Geophys. Res.-Oceans, 127, e2020JC017055, <a href="https://doi.org/10.1029/2020JC017055" target="_blank">https://doi.org/10.1029/2020JC017055</a>, 2022.

    </mixed-citation></ref-html>--></article>
