<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing with OASIS Tables v3.0 20080202//EN" "journalpub-oasis3.dtd">
<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" dtd-version="3.0"><?xmltex \makeatother\@nolinetrue\makeatletter?>
  <front>
    <journal-meta>
<journal-id journal-id-type="publisher">NPG</journal-id>
<journal-title-group>
<journal-title>Nonlinear Processes in Geophysics</journal-title>
<abbrev-journal-title abbrev-type="publisher">NPG</abbrev-journal-title>
<abbrev-journal-title abbrev-type="nlm-ta">Nonlin. Processes Geophys.</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1607-7946</issn>
<publisher><publisher-name>Copernicus Publications</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>

    <article-meta>
      <article-id pub-id-type="doi">10.5194/npg-24-125-2017</article-id><title-group><article-title>Insights on the role of accurate state estimation in coupled model parameter
estimation by a conceptual climate model study</article-title>
      </title-group><?xmltex \runningtitle{Insights on the role of accurate state estimation}?><?xmltex \runningauthor{X. Yu et al.}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Yu</surname><given-names>Xiaolin</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="yes" rid="aff1 aff2">
          <name><surname>Zhang</surname><given-names>Shaoqing</given-names></name>
          <email>szhang@ouc.edu.cn</email>
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1 aff2">
          <name><surname>Lin</surname><given-names>Xiaopei</given-names></name>
          
        </contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Li</surname><given-names>Mingkui</given-names></name>
          
        </contrib>
        <aff id="aff1"><label>1</label><institution>Physical Oceanography Laboratory of OUC, and Qingdao Collaborative
Innovation Center of <?xmltex \hack{\newline}?>Marine Science and Technology, Qingdao, 266001, China</institution>
        </aff>
        <aff id="aff2"><label>2</label><institution>Function Laboratory for Ocean Dynamics and Climate, Qingdao National
Laboratory for <?xmltex \hack{\newline}?>Marine Science and Technology, Qingdao, 266001, China</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Shaoqing Zhang (szhang@ouc.edu.cn)</corresp></author-notes><pub-date><day>6</day><month>March</month><year>2017</year></pub-date>
      
      <volume>24</volume>
      <issue>2</issue>
      <fpage>125</fpage><lpage>139</lpage>
      <history>
        <date date-type="received"><day>12</day><month>September</month><year>2016</year></date>
           <date date-type="rev-request"><day>27</day><month>September</month><year>2016</year></date>
           <date date-type="rev-recd"><day>15</day><month>February</month><year>2017</year></date>
           <date date-type="accepted"><day>15</day><month>February</month><year>2017</year></date>
      </history>
      <permissions>
<license license-type="open-access">
<license-p>This work is licensed under a Creative Commons Attribution 3.0 Unported License. To view a copy of this license, visit <ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/3.0/">http://creativecommons.org/licenses/by/3.0/</ext-link></license-p>
</license>
</permissions><self-uri xlink:href="https://npg.copernicus.org/articles/24/125/2017/npg-24-125-2017.html">This article is available from https://npg.copernicus.org/articles/24/125/2017/npg-24-125-2017.html</self-uri>
<self-uri xlink:href="https://npg.copernicus.org/articles/24/125/2017/npg-24-125-2017.pdf">The full text article is available as a PDF file from https://npg.copernicus.org/articles/24/125/2017/npg-24-125-2017.pdf</self-uri>


      <abstract>
    <p>The uncertainties in values of coupled model parameters
are an important source of model bias that causes model climate drift. The
values can be calibrated by a parameter estimation procedure that projects
observational information onto model parameters. The signal-to-noise ratio
of error covariance between the model state and the parameter being estimated
directly determines whether the parameter estimation succeeds or not. With
a conceptual climate model that couples the stochastic atmosphere and
slow-varying ocean, this study examines the sensitivity of state–parameter
covariance on the accuracy of estimated model states in different model
components of a coupled system. Due to the interaction of multiple timescales,
the fast-varying “atmosphere” with a chaotic nature is the major
source of the inaccuracy of estimated state–parameter covariance. Thus,
enhancing the estimation accuracy of atmospheric states is very important
for the success of coupled model parameter estimation, especially for the
parameters in the air–sea interaction processes. The impact of
chaotic-to-periodic ratio in state variability on parameter estimation is
also discussed. This simple model study provides a guideline when real
observations are used to optimize model parameters in a coupled general
circulation model for improving climate analysis and predictions.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

      <?xmltex \hack{\newpage}?>
<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p>Nowadays, a coupled atmosphere–ocean general circulation model is widely
used as a common tool in climate research and related applications. However,
due to the approximation nature of model numeric schemes and physical
parameterization, a model always has errors. In particular, one
traditionally determines the values of model parameters by experience or a
trial procedure which heuristically provides a reasonable estimate but
usually is not optimal for the coupled model. Recently, with the aid of
information estimation (filtering) theory (e.g., Jazwinski, 1970), research
on optimization of coupled model parameters based on instantaneous
observational information has grown quickly (e.g., Wu et al., 2013; Liu et
al., 2014a, b; Li et al., 2016). Traditional data assimilation
that only uses observations to estimate model states (i.e., state estimation)
becomes both state estimation (SE) and parameter estimation (also called
optimization) (PE) with observations. Such a PE process can be implemented
through a variational (adjoint) method (e.g., Stammer, 2005; Liu et al.,
2012) or an ensemble Kalman filter (e.g., Zhang et al., 2012) or even a
direct Bayesian approach (e.g., Jackson et al., 2004).</p>
      <p>In the previous study with a conceptual coupled model, Zhang et al. (2012)
pointed out that an important aspect of successful coupled model parameter
optimization is that the coupled model states must be sufficiently
constrained by observations first. This is because multiple sources of
uncertainties exist in a coupled system consisting of different timescale
media. If the part of uncertainties in model states, which are not correlated
with parameter errors, has not been sufficiently constrained yet, the
covariance between the model states and parameters being estimated is noisy
(e.g., Dee and Silva, 1998; Dee, 2005; Annan et al., 2005). Without direct
observational information, the noise in state–parameter covariance, which is
the key quantity to project observed state information onto the parameter,
can bring the estimated parameter toward an erroneous value (Zhang,
2011b). This is a general understanding about coupled model parameter
estimation. However, since multiple media of the climate system have
different timescale variability and different quality of observations so as
to have different contributions to the uncertainty of state–parameter
covariance, an outstanding question is what the impact of SE accuracy in
different media is on coupled model PE. Given the extreme importance of
state–parameter covariance for PE, a clear answer for this question must
further our understanding on coupled model parameter estimation.</p>
      <p>To answer this question, this study uses a simple coupled model to examine
the influence of observation-constrained states in each medium on PE for
different parameters in different media thoroughly. The model conceptually
describes the interactions of three typical timescales of the climate system –
chaotic (synoptic) atmosphere, seasonal–interannual upper ocean and decadal
deep ocean. A twin experiment framework is used throughout the whole study.</p>
      <p>The paper is organized as follows. After the introduction, Sect. 2 gives the
methodology, including brief descriptions of the simple coupled model,
filtering algorithm and twin experiment framework. Section 3 first presents
the results of various PE experiments with different partial SE settings
and then analyzes the conditions for successful PE with partial SE. Finally,
the summary and discussions are given in Sect. 4.</p>
</sec>
<sec id="Ch1.S2">
  <title>Methodology</title>
<sec id="Ch1.S2.SS1">
  <title>The model</title>
      <p>To clearly address the issue posed in the introduction, this study employs
the simple pycnocline prediction model developed by Zhang (2011a, b). This
conceptual coupled model is based on Lorenz's three-variable chaotic model
(Lorenz, 1963) that is coupled a slab ocean variable (Zhang et al., 2012)
interacting with a pycnocline predictive model (Gnanadesikan, 1999). For the
problem that this concerns, this conceptual coupled model shares the
fundamental features with a coupled general circulation model (CGCM; see
Zhang, 2011a; Han et al., 2013). The model development can be traced in
Zhang (2011a, b) and Zhang et al. (2012) in detail. Here, we only comment on
major points that are relevant to this study. The model includes five
equations:

                <disp-formula specific-use="align" content-type="numbered"><mml:math id="M1" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msub><mml:mover accent="true"><mml:mi>x</mml:mi><mml:mo mathvariant="normal">˙</mml:mo></mml:mover><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msub><mml:mover accent="true"><mml:mi>x</mml:mi><mml:mo mathvariant="normal">˙</mml:mo></mml:mover><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:mo>(</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mi>w</mml:mi><mml:mo>)</mml:mo><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mover accent="true"><mml:mi>x</mml:mi><mml:mo mathvariant="normal">˙</mml:mo></mml:mover><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mo>=</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:mi>b</mml:mi><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:msub><mml:mi>O</mml:mi><mml:mi>m</mml:mi></mml:msub><mml:mover accent="true"><mml:mi>w</mml:mi><mml:mo mathvariant="normal">˙</mml:mo></mml:mover></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>=</mml:mo><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mi mathvariant="italic">η</mml:mi><mml:mo>+</mml:mo><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub><mml:mi>w</mml:mi><mml:mi mathvariant="italic">η</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi>O</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mi>w</mml:mi></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>+</mml:mo><mml:msub><mml:mi>S</mml:mi><mml:mi>m</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>S</mml:mi><mml:mi>s</mml:mi></mml:msub><mml:mi>cos⁡</mml:mi><mml:mo>(</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mi mathvariant="italic">π</mml:mi><mml:mi>t</mml:mi><mml:mo>/</mml:mo><mml:msub><mml:mi>S</mml:mi><mml:mtext>pd</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="Ch1.E1"><mml:mtd/><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi mathvariant="normal">Γ</mml:mi><mml:mover accent="true"><mml:mi mathvariant="italic">η</mml:mi><mml:mo mathvariant="normal">˙</mml:mo></mml:mover></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>=</mml:mo><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">5</mml:mn></mml:msub><mml:mi>w</mml:mi><mml:mo>+</mml:mo><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub><mml:mi>w</mml:mi><mml:mi mathvariant="italic">η</mml:mi><mml:mo>-</mml:mo><mml:msub><mml:mi>O</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mi mathvariant="italic">η</mml:mi><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            The first three equations (Lorenz's three-variable chaotic model) represent the
dynamics of “atmosphere”. The last two equations, respectively, represent the
dynamics of the slab upper ocean and the pycnocline depth variation of deep
ocean. There are five variables in the model. <inline-formula><mml:math id="M2" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M3" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M4" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> are the
fast-varying variables of the atmosphere with the parameters <inline-formula><mml:math id="M5" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math id="M6" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M7" display="inline"><mml:mi>b</mml:mi></mml:math></inline-formula> set as 9.95, 28 and <inline-formula><mml:math id="M8" display="inline"><mml:mrow><mml:mn mathvariant="normal">8</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:math></inline-formula>, which sustain the chaotic nature of the
atmosphere. <inline-formula><mml:math id="M9" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M10" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula> are the low-frequency variables of the ocean.
Equation (1) tells that the ocean in this system is driven by two kinds of
forcings: the chaotic <inline-formula><mml:math id="M11" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> from the Lorenz equations and the periodic
cosine function term serving as the external forcing of the system. The
coupling parameter <inline-formula><mml:math id="M12" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, which interacts with the chaotic forcing
<inline-formula><mml:math id="M13" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, is set as 1. <inline-formula><mml:math id="M14" display="inline"><mml:mrow><mml:msub><mml:mi>O</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the damping coefficient. In this simple model,
the damping coefficient is set to be identical for the upper ocean and deep
ocean as 1. Values of other parameters such as <inline-formula><mml:math id="M15" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M16" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M17" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">4</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math id="M18" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi>m</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M19" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi>s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M20" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mtext>pd</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M21" display="inline"><mml:mrow><mml:msub><mml:mi>O</mml:mi><mml:mi>m</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M22" display="inline"><mml:mi mathvariant="normal">Γ</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M23" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">5</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M24" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> are set as
10<inline-formula><mml:math id="M25" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, 10<inline-formula><mml:math id="M26" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, 10<inline-formula><mml:math id="M27" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, 10, 1, 10, 10, 10<inline-formula><mml:math id="M28" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula>, 1, 10<inline-formula><mml:math id="M29" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula> (the
justification can be found in the literature cited before). The upper ocean
is slower than the atmosphere due to the great heat capacity of water. The deep
ocean is slower than the upper ocean due to lack of mixing. The parameter
<inline-formula><mml:math id="M30" display="inline"><mml:mrow><mml:msub><mml:mi>O</mml:mi><mml:mi>m</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M31" display="inline"><mml:mrow><mml:mi mathvariant="normal">Γ</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> that represents the heat capacity of upper (deep) ocean,
combined with the damping coefficient <inline-formula><mml:math id="M32" display="inline"><mml:mrow><mml:msub><mml:mi>O</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, defines the fluid
characteristic timescale. For example, the ratio <inline-formula><mml:math id="M33" display="inline"><mml:mrow><mml:msub><mml:mi>O</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M34" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M35" display="inline"><mml:mrow><mml:msub><mml:mi>O</mml:mi><mml:mi>m</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> of 10<inline-formula><mml:math id="M36" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>
(<inline-formula><mml:math id="M37" display="inline"><mml:mrow><mml:msub><mml:mi>O</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 1, <inline-formula><mml:math id="M38" display="inline"><mml:mrow><mml:msub><mml:mi>O</mml:mi><mml:mi>m</mml:mi></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 10) defines the characteristic timescale of <inline-formula><mml:math id="M39" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>
being 10 times of that of <inline-formula><mml:math id="M40" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. It is important to mention that, with
these parameter settings, the chaotic atmospheric forcing is stronger than
the periodical forcing in the “ocean” equation. The ocean feeds back
to the atmosphere in the low-frequency band; therefore, in this coupled
model, the uncertainty caused by chaotic atmosphere spreads to whole
range of resolved periods for both the atmosphere and the ocean.
From Eq. (1), it can be seen that the parameter  <inline-formula><mml:math id="M41" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> has a direct influence
on the variation of the state variable <inline-formula><mml:math id="M42" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, and the parameter <inline-formula><mml:math id="M43" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> has
a direct influence on the variation of the state variable <inline-formula><mml:math id="M44" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>. The estimation
of these two parameters will be used later to interpret the relation between
the accuracy of SE and success of PE. Although very simple, this
low-order (limited-size) conceptual model mimics very fundamental natures of
interactions of three typical timescales in the real world: synoptic
(chaotic) atmosphere, seasonal–interannual upper tropical oceans and
decadal/multidecadal deep ocean (Zhang, 2011b). The boundary condition is a
predefined seasonally varying solar radiation:
<inline-formula><mml:math id="M45" display="inline"><mml:mrow><mml:mi>S</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:msub><mml:mi>S</mml:mi><mml:mi>m</mml:mi></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>S</mml:mi><mml:mi>s</mml:mi></mml:msub><mml:mi>cos⁡</mml:mi><mml:mo>(</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mi mathvariant="italic">π</mml:mi><mml:mi>t</mml:mi><mml:mo>/</mml:mo><mml:msub><mml:mi>S</mml:mi><mml:mtext>pd</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. The state variable <inline-formula><mml:math id="M46" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> mimics
the surface temperature of the ocean and the <inline-formula><mml:math id="M47" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> mimics the surface wind
of the atmosphere. Here, we may mimic some parameterization of CGCM using the
relation of parameters and model variables (<inline-formula><mml:math id="M48" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M49" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> analogous to
the drag coefficient <inline-formula><mml:math id="M50" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mi mathvariant="normal">d</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> and wind for the stress on ocean, for instance).</p>
</sec>
<sec id="Ch1.S2.SS2">
  <title>Filtering scheme</title>
      <p>The filtering method used in this study is the ensemble adjustment Kalman
filter (EAKF; Anderson, 2001). The EAKF algorithm shares all theoretical
derivation of ensemble Kalman filter (EnKF; e.g., Evensen, 1994; Houtekamer
and Mitchell, 1998) that combines an observational probability distribution function
(PDF) with model PDF but under an adjustment idea. After the first version
(Anderson, 2001), the EAKF algorithm had improved its implementation as a
sequential local least squares filter (Anderson, 2003). The EAKF is a member
of ensemble square root filters (Tippett et al., 2003), taking the advantage
of ensemble Kalman filter without perturbing the observation (Whitaker
and Hamill, 2002). While the detailed and exhausted mathematical derivations
can be referred to the aforementioned literature and others (e.g., Zhang and
Anderson, 2003), here we mainly comment on the computational implementation
with a two-step procedure (Anderson, 2003; Zhang et al., 2007) that is
relevant to this study. The first step uses two Gaussian convolutions to
derive the observational increment at the observational location as

                <disp-formula specific-use="align" content-type="numbered"><mml:math id="M51" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E2"><mml:mtd/><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi mathvariant="normal">Δ</mml:mi><mml:msubsup><mml:mi>y</mml:mi><mml:mi>i</mml:mi><mml:mi>o</mml:mi></mml:msubsup></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>=</mml:mo><mml:msub><mml:munder><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mo>(</mml:mo><mml:msup><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>p</mml:mi></mml:msup><mml:msup><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:msup><mml:mover accent="true"><mml:mi>y</mml:mi><mml:mo mathvariant="normal">¯</mml:mo></mml:mover><mml:mi>p</mml:mi></mml:msup><mml:mo>+</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mo>(</mml:mo><mml:msup><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>o</mml:mi></mml:msup><mml:msup><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:msup><mml:mi>y</mml:mi><mml:mi>o</mml:mi></mml:msup></mml:mrow><mml:mrow><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mo>(</mml:mo><mml:msup><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>p</mml:mi></mml:msup><mml:msup><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mo>+</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mo>(</mml:mo><mml:msup><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>o</mml:mi></mml:msup><mml:msup><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfrac></mml:mstyle><mml:mo mathvariant="normal">︸</mml:mo></mml:munder><mml:mrow><mml:mstyle scriptlevel="-1" displaystyle="true"><mml:mtable class="substack" rowspacing="0.2ex" columnspacing="0.4em"><mml:mtr><mml:mtd><mml:mtext>adjusted ensemble</mml:mtext></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mtext>mean</mml:mtext></mml:mtd></mml:mtr></mml:mtable></mml:mstyle></mml:mrow></mml:msub><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mspace linebreak="nobreak" width="0.25em"/><mml:mspace width="0.25em" linebreak="nobreak"/><mml:mo>+</mml:mo><mml:msub><mml:munder><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msubsup><mml:mi>y</mml:mi><mml:mi>i</mml:mi><mml:mi>p</mml:mi></mml:msubsup></mml:mrow><mml:msqrt><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:mo>(</mml:mo><mml:mstyle displaystyle="false"><mml:mfrac style="text"><mml:mrow><mml:msup><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>p</mml:mi></mml:msup></mml:mrow><mml:mrow><mml:msup><mml:mi mathvariant="italic">σ</mml:mi><mml:mi>o</mml:mi></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:msup><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:msqrt></mml:mfrac></mml:mstyle><mml:mo mathvariant="normal">︸</mml:mo></mml:munder><mml:mrow><mml:mstyle scriptlevel="-1" displaystyle="true"><mml:mtable class="substack" rowspacing="0.2ex" columnspacing="0.4em"><mml:mtr><mml:mtd><mml:mtext>adjusted ensemble</mml:mtext></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mtext>spread</mml:mtext></mml:mtd></mml:mtr></mml:mtable></mml:mstyle></mml:mrow></mml:msub><mml:mo>-</mml:mo><mml:msubsup><mml:mi>y</mml:mi><mml:mi>i</mml:mi><mml:mi>p</mml:mi></mml:msubsup><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mtr><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>(</mml:mo><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>∼</mml:mo><mml:mi>N</mml:mi><mml:mo>,</mml:mo><mml:mi>N</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mtext>is the ensemble size</mml:mtext><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr></mml:mtable></mml:math></disp-formula>

            where <inline-formula><mml:math id="M52" display="inline"><mml:mi>y</mml:mi></mml:math></inline-formula> represents the observable state variable and <inline-formula><mml:math id="M53" display="inline"><mml:mi mathvariant="italic">σ</mml:mi></mml:math></inline-formula> is its error
standard deviation. A superscript <inline-formula><mml:math id="M54" display="inline"><mml:mi>p</mml:mi></mml:math></inline-formula> always denotes the prior quantity
estimated by the model, and <inline-formula><mml:math id="M55" display="inline"><mml:mi>o</mml:mi></mml:math></inline-formula> denotes observational quantity. An over-bar denotes
the ensemble mean.</p>
      <p>The second step regresses the observational increment onto the related model
states or parameters by the model ensemble-evaluated covariance as

                <disp-formula specific-use="align" content-type="numbered"><mml:math id="M56" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi mathvariant="normal">Δ</mml:mi><mml:msubsup><mml:mi>p</mml:mi><mml:mi>i</mml:mi><mml:mi>u</mml:mi></mml:msubsup></mml:mrow></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mrow class="chem"><mml:mi mathvariant="normal">cov</mml:mi></mml:mrow><mml:mo>(</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>p</mml:mi><mml:mo>,</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>y</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:mrow class="chem"><mml:mi mathvariant="normal">SD</mml:mi></mml:mrow><mml:mo>(</mml:mo><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>y</mml:mi><mml:msup><mml:mo>)</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:mfrac></mml:mstyle><mml:mi mathvariant="normal">Δ</mml:mi><mml:msubsup><mml:mi>y</mml:mi><mml:mi>i</mml:mi><mml:mi>o</mml:mi></mml:msubsup><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="Ch1.E3"><mml:mtd/><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mo>(</mml:mo><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>∼</mml:mo><mml:mi>N</mml:mi><mml:mo>,</mml:mo><mml:mi>N</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mtext>is the ensemble size</mml:mtext><mml:mo>)</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

            The linear regression in Eq. (3) is built with the help of the 20-member
ensemble. <inline-formula><mml:math id="M57" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msubsup><mml:mi>p</mml:mi><mml:mi>i</mml:mi><mml:mi>u</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> is the adjusted state (parameter) increment
given the observational increment <inline-formula><mml:math id="M58" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msubsup><mml:mi>y</mml:mi><mml:mi>i</mml:mi><mml:mi>o</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>. cov(<inline-formula><mml:math id="M59" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>p</mml:mi></mml:mrow></mml:math></inline-formula>,
<inline-formula><mml:math id="M60" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>y</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is the error covariance computed between the ensembles of the
model variable at the model grid and at the observational location (for SE)
or between the ensembles of the state variable and perturbed parameter being
estimated (for PE). SD(<inline-formula><mml:math id="M61" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>y</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is the standard deviation of the ensemble
of state variables at the observational location. For example, when using
<inline-formula><mml:math id="M62" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> to estimate <inline-formula><mml:math id="M63" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, on each estimating step, the ensemble of
<inline-formula><mml:math id="M64" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and the ensemble of <inline-formula><mml:math id="M65" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> are used to calculate the ratio of
cov <inline-formula><mml:math id="M66" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> SD<inline-formula><mml:math id="M67" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:math></inline-formula> and adjust <inline-formula><mml:math id="M68" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> toward a better value that minimizes the
errors of model states from the observations. While such a sequential
implementation provides much computational convenience for data
assimilation, the EAKF maintains the nonlinearity of background flows as
much as possible (Zhang and Anderson, 2003; Zhang et al., 2007). It is worth
mentioning that just as usual EnKFs or variational methods without a model error
compensation term, the EAKF has the disadvantage of dealing with model
errors.</p>
      <p>Some other relevant aspects of the method are also commented here. Just as
in Zhang and Anderson (2003), based on the trade-off between cost and
assimilation quality, after a series of sensitivity tests on ensemble sizes
of 10 and 20–100, no significant difference in the quality of
standard assimilation is found when the ensemble size is greater than 20.
Thus, a practical ensemble size of 20 is chosen as a basic experiment
setting. We will examine the sensitivity of major conclusions of the
addressed problem in this study to the ensemble size in related places
later. Although the intervals of the atmosphere and ocean observations are
different in the real world, for convenience of comparison, we set a uniform
update interval for SE (in the atmosphere and ocean) and PE as five time steps
as the basic setting in this study (we will also discuss the influence of
update intervals in related places later). The inflation method must be
included in the EAKF PE. Considering that the inflated parameter ensemble
will influence state variables, no inflation is applied to the model
state ensemble. The PE inflation scheme follows Zhang (2011b): when the SD
(spread) of the parameter ensemble is below some limit (40 % of the
initial spread), a factor is applied to inflate the parameter ensemble
spread to this value. During this process, the ensemble structure of
parameter remains unchanged. In addition, to avoid the uncertainty and
complexity of evaluating cross covariance between media that have too
different characteristic timescales (Han et al., 2013), in the SE of this
study, we only allow <inline-formula><mml:math id="M69" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> observation impact on all <inline-formula><mml:math id="M70" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> variables, and
<inline-formula><mml:math id="M71" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> (<inline-formula><mml:math id="M72" display="inline"><mml:mrow><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> observation impact on <inline-formula><mml:math id="M73" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> (<inline-formula><mml:math id="M74" display="inline"><mml:mrow><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> itself, while the PE could use
different medium observations.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1"><caption><p>List of the successful (S) and failed (F) parameter estimation (PE)
cases with partial state estimation (SE) in eight PE experiments (in the
parenthesis is the experiment serial number).</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.98}[.98]?><oasis:tgroup cols="5">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="left"/>
     <oasis:colspec colnum="3" colname="col3" align="left"/>
     <oasis:colspec colnum="4" colname="col4" align="left"/>
     <oasis:colspec colnum="5" colname="col5" align="left"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry rowsep="1" namest="col2" nameend="col5" align="center">PE </oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">SE</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M75" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>-to-<inline-formula><mml:math id="M76" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M77" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M78" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M79" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>-to-<inline-formula><mml:math id="M80" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math id="M81" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M82" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M83" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> by <inline-formula><mml:math id="M84" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> obs</oasis:entry>  
         <oasis:entry colname="col2">S(1)</oasis:entry>  
         <oasis:entry colname="col3">S(2)</oasis:entry>  
         <oasis:entry colname="col4">S(3)</oasis:entry>  
         <oasis:entry colname="col5">S(4)</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M85" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> by <inline-formula><mml:math id="M86" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> obs</oasis:entry>  
         <oasis:entry colname="col2">F(5)</oasis:entry>  
         <oasis:entry colname="col3">F(6)</oasis:entry>  
         <oasis:entry colname="col4">F(7)</oasis:entry>  
         <oasis:entry colname="col5">F(8)</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table></table-wrap>

</sec>
<sec id="Ch1.S2.SS3">
  <title>Twin experiment setup</title>
      <p>Twin experiments are set to test the relation between coupled SE and PE. The
model with the standard parameter values described in Sect. 2.1 is running
10<inline-formula><mml:math id="M87" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> time units (TUs) after a spinup of 10<inline-formula><mml:math id="M88" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> TUs (2 <inline-formula><mml:math id="M89" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> 10<inline-formula><mml:math id="M90" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> TUs in total). Here, a TU is a dimensionless time unit as defined in
Lorenz (1963), roughly referring to the timescale of atmosphere going
through from an attractive lob to the other (1 TU equals 100 steps of the
model integrations with a <inline-formula><mml:math id="M91" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:mi>t</mml:mi></mml:mrow></mml:math></inline-formula> of 0.01). The output of last 10<inline-formula><mml:math id="M92" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula> TUs is then used as the “truth” to produce “observations”. The
observations are sampled as the truth values superimposed by a white
noise with an observational interval (five time steps in this case). To
simplify, we sample the atmosphere observations by <inline-formula><mml:math id="M93" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and ocean
observations by <inline-formula><mml:math id="M94" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> as the basic experiment setting. The standard deviation of
observational errors (from the in situ instruments, for example) is 2
for <inline-formula><mml:math id="M95" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and 0.2 for <inline-formula><mml:math id="M96" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> in our cases. Note that what we describe here is a kind
of observing system simulation experiment (OSSE; e.g., Tong and Xue, 2005;
Jung et al., 2010). The assimilation model control is an ensemble of
integrations for each test case with the perturbed parameters on an
erroneously set parameter value (will be described later). The initial
conditions of the ensemble for assimilation are taken from the end of
a 10<inline-formula><mml:math id="M97" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">3</mml:mn></mml:msup></mml:math></inline-formula>-TU spinup (the different members in the ensemble are all the resulting consequences from the parameter perturbation).</p>
      <p>The first set of PE experiments is done to study the parameters in “air–sea”
interaction. To do that, we use two parameters – <inline-formula><mml:math id="M98" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in the atmosphere
equation and <inline-formula><mml:math id="M99" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in the ocean equation to perform PE experiments. We
first conduct two PE cases with full SE – both <inline-formula><mml:math id="M100" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M101" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> are constrained by
their observations. Then, we conduct eight PE cases with partial SE – only some
medium is constrained by its observations as listed in Table 1. Through
thoroughly analyzing these PE cases with partial SE, which have different SE
accuracy, we are able to detect the influence of the SE accuracy in
different media on coupled model PE. After the first set PE experiments, we
also conduct a second set of PE experiments to examine the influence of
state estimation accuracy on the “deep ocean” parameter <inline-formula><mml:math id="M102" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> using <inline-formula><mml:math id="M103" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>
observations (the observational error is set as 0.1).</p>
      <p>In all PE cases, the initial value of the parameter to be estimated is
deliberately set as biased from the truth (referring to the standard
parameter values described in Sect. 2.1). To maintain the chaotic nature
of the Lorenz equation, parameter values are required to be within a certain
range. This is a constraint for the biased amount of the initial values of a
parameter. Based on some sensitivity studies, the chaotic performance is
more vulnerable to the change of the atmospheric parameter <inline-formula><mml:math id="M104" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> than to
the change of the oceanic parameters. Therefore, we set the ensemble initial
values of <inline-formula><mml:math id="M105" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> as a Gaussian distribution <inline-formula><mml:math id="M106" display="inline"><mml:mi>N</mml:mi></mml:math></inline-formula> (30, 1; 30 as the mean and 1 as
the standard deviation), and the spread is enough for the model ensemble
uncertainty. The ensemble initial values of <inline-formula><mml:math id="M107" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> are set as <inline-formula><mml:math id="M108" display="inline"><mml:mi>N</mml:mi></mml:math></inline-formula> (0.8, 0.5; restricted to be positive definite). If PE is successful, then the ensemble
mean value of <inline-formula><mml:math id="M109" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M110" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> should converge to 28 (1). In all PE
experiments, the PE is activated after 80 TUs of SE constrain
the model states close to the observations so as to enhance the
parameter–state covariance for the coupled PE (Zhang et al., 2012). The
delayed timescale of PE from SE will be discussed later.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T2"><caption><p>List of root mean square errors of the state variable and
the parameter during the last 100 TUs in eight PE experiments.</p></caption><oasis:table frame="topbot"><?xmltex \begin{scaleboxenv}{.98}[.98]?><oasis:tgroup cols="5">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry rowsep="1" namest="col2" nameend="col5" align="center">State and parameter </oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1">Exp. number</oasis:entry>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M111" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M112" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M113" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math id="M114" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1">S(1): <inline-formula><mml:math id="M115" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> obs, <inline-formula><mml:math id="M116" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>-to-<inline-formula><mml:math id="M117" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">5.9224</oasis:entry>  
         <oasis:entry colname="col3">0.0570</oasis:entry>  
         <oasis:entry colname="col4">0.0889</oasis:entry>  
         <oasis:entry colname="col5">N/A</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">S(2): <inline-formula><mml:math id="M118" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> obs, <inline-formula><mml:math id="M119" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M120" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">5.9086</oasis:entry>  
         <oasis:entry colname="col3">0.0567</oasis:entry>  
         <oasis:entry colname="col4">0.0895</oasis:entry>  
         <oasis:entry colname="col5">N/A</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">S(3): <inline-formula><mml:math id="M121" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> obs, <inline-formula><mml:math id="M122" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>-to-<inline-formula><mml:math id="M123" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">5.9213</oasis:entry>  
         <oasis:entry colname="col3">0.0731</oasis:entry>  
         <oasis:entry colname="col4">N/A</oasis:entry>  
         <oasis:entry colname="col5">0.0250</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">S(4): <inline-formula><mml:math id="M124" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> obs, <inline-formula><mml:math id="M125" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M126" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">5.9174</oasis:entry>  
         <oasis:entry colname="col3">0.0589</oasis:entry>  
         <oasis:entry colname="col4">N/A</oasis:entry>  
         <oasis:entry colname="col5">0.0153</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">F(5): <inline-formula><mml:math id="M127" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> obs, <inline-formula><mml:math id="M128" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>-to-<inline-formula><mml:math id="M129" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">14.6801</oasis:entry>  
         <oasis:entry colname="col3">0.0360</oasis:entry>  
         <oasis:entry colname="col4">1.6806</oasis:entry>  
         <oasis:entry colname="col5">N/A</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">F(6): <inline-formula><mml:math id="M130" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> obs, <inline-formula><mml:math id="M131" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M132" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">14.3177</oasis:entry>  
         <oasis:entry colname="col3">0.0381</oasis:entry>  
         <oasis:entry colname="col4">3.2612</oasis:entry>  
         <oasis:entry colname="col5">N/A</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">F(7): <inline-formula><mml:math id="M133" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> obs, <inline-formula><mml:math id="M134" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>-to-<inline-formula><mml:math id="M135" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">14.4102</oasis:entry>  
         <oasis:entry colname="col3">0.0744</oasis:entry>  
         <oasis:entry colname="col4">N/A</oasis:entry>  
         <oasis:entry colname="col5">0.3848</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1">F(8): <inline-formula><mml:math id="M136" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> obs, <inline-formula><mml:math id="M137" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M138" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">14.4004</oasis:entry>  
         <oasis:entry colname="col3">0.0660</oasis:entry>  
         <oasis:entry colname="col4">N/A</oasis:entry>  
         <oasis:entry colname="col5">0.3454</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup><?xmltex \end{scaleboxenv}?></oasis:table></table-wrap>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1" specific-use="star"><caption><p>Time series of the ensemble mean (solid line) of the
estimated parameter <inline-formula><mml:math id="M139" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> using observations of <inline-formula><mml:math id="M140" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> (i.e., <inline-formula><mml:math id="M141" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M142" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>)
with state estimation (SE) of <bold>(a)</bold> both the atmosphere (<inline-formula><mml:math id="M143" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>) and ocean
(<inline-formula><mml:math id="M144" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>) from <inline-formula><mml:math id="M145" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M146" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> observations and <bold>(b)</bold> only <inline-formula><mml:math id="M147" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> with the
<inline-formula><mml:math id="M148" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> observations. The dashed line marks the “true” value of the parameter
<inline-formula><mml:math id="M149" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and the shaded area represents the range of ensemble.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://npg.copernicus.org/articles/24/125/2017/npg-24-125-2017-f01.png"/>

        </fig>

</sec>
</sec>
<sec id="Ch1.S3">
  <title>Impact of SE accuracy on coupled model PE</title>
      <p>With the method and experiment settings described in Sect. 2, we test
different PE performances under different SE settings. Generally, with a
full SE (all the atmospheric <inline-formula><mml:math id="M150" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> and oceanic <inline-formula><mml:math id="M151" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> states are estimated
with the observations that sample the truth), the PE is steady and
successful, no matter what observations are used to estimate which
parameter. For example, the result of using observations of <inline-formula><mml:math id="M152" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> (in the ocean)
to estimate <inline-formula><mml:math id="M153" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (parameter in the atmosphere) with all simulated <inline-formula><mml:math id="M154" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>
and <inline-formula><mml:math id="M155" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> being estimated by <inline-formula><mml:math id="M156" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M157" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> observations is shown in Fig. 1a. We can
see that the ensemble of <inline-formula><mml:math id="M158" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> successfully converges to the truth from
the initial biased values around 30. However, if only a part of observations
(only one medium of observations) is used in SE, then the PE succeeds in some
cases but fails in others (Fig. 1b). Next, we will analyze and discuss the
first set of eight cases listed in Table 1 to understand the role of different
medium SE on coupled model PE.</p>
<sec id="Ch1.S3.SS1">
  <title>Stability, reliability and convergent rate of PE with partial SE</title>
      <p>In Table 1, <inline-formula><mml:math id="M159" display="inline"><mml:mi>X</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M160" display="inline"><mml:mi>Y</mml:mi></mml:math></inline-formula> means using observations of <inline-formula><mml:math id="M161" display="inline"><mml:mi>X</mml:mi></mml:math></inline-formula> to estimate the
parameter <inline-formula><mml:math id="M162" display="inline"><mml:mi>Y</mml:mi></mml:math></inline-formula> (<inline-formula><mml:math id="M163" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>-to-<inline-formula><mml:math id="M164" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> means using observations of <inline-formula><mml:math id="M165" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> to
estimate parameter <inline-formula><mml:math id="M166" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, for instance). Table 1 shows that all four PE cases
with atmospheric SE succeed while all four PE cases with oceanic SE fail, no
matter what medium observations are used to estimate which medium parameter.
The root mean square error (RMSE) of the model states and parameters during
the last 100 TUs are shown in Table 2. The <inline-formula><mml:math id="M167" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> RMSEs in the failed cases
are higher than in the successful cases, while the <inline-formula><mml:math id="M168" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> RMSEs in two failed cases
F(5) and F(6) are even smaller than the ones in successful cases. Also, in
both cases of S(2) and F(6), <inline-formula><mml:math id="M169" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>  is estimated by <inline-formula><mml:math id="M170" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> observations but
only when the <inline-formula><mml:math id="M171" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> states are constrained by <inline-formula><mml:math id="M172" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> observations,  the PE is
successful or otherwise the PE has failed, although the state <inline-formula><mml:math id="M173" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> is constrained
by the <inline-formula><mml:math id="M174" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> observations. These suggest that the uncertainty of <inline-formula><mml:math id="M175" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is mainly
responsible for the failure of the PE. An example of failed PE in which the
observations of <inline-formula><mml:math id="M176" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> are used to estimate <inline-formula><mml:math id="M177" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is shown in Fig. 1b. We can see
the ensemble of <inline-formula><mml:math id="M178" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in Fig. 1b cannot converge to its true value of
28. We will thoroughly analyze such failed cases next.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><caption><p>Time series of ensemble means (solid line) of the
estimated parameter <inline-formula><mml:math id="M179" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in three experiments, <bold>(a)</bold> <inline-formula><mml:math id="M180" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>-to-<inline-formula><mml:math id="M181" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (using <inline-formula><mml:math id="M182" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> observations to estimate <inline-formula><mml:math id="M183" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> with SE for both
<inline-formula><mml:math id="M184" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M185" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>, <bold>(b)</bold> <inline-formula><mml:math id="M186" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>-to-<inline-formula><mml:math id="M187" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> with SE for <inline-formula><mml:math id="M188" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> only,
<bold>(c)</bold> <inline-formula><mml:math id="M189" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M190" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> with SE for <inline-formula><mml:math id="M191" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> only. Any other notations are the same
as in Fig. 1.</p></caption>
          <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://npg.copernicus.org/articles/24/125/2017/npg-24-125-2017-f02.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3" specific-use="star"><caption><p>Time series of ensemble means of the estimated parameter
<inline-formula><mml:math id="M192" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in three experiments, <bold>(a)</bold> <inline-formula><mml:math id="M193" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M194" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (using <inline-formula><mml:math id="M195" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> observations to
estimate <inline-formula><mml:math id="M196" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> with SE for both <inline-formula><mml:math id="M197" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M198" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>, <bold>(b)</bold> <inline-formula><mml:math id="M199" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>-to-<inline-formula><mml:math id="M200" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (using <inline-formula><mml:math id="M201" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> observations to estimate <inline-formula><mml:math id="M202" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> with SE for
<inline-formula><mml:math id="M203" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> only, <bold>(c)</bold> <inline-formula><mml:math id="M204" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M205" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> with SE for <inline-formula><mml:math id="M206" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> only. Any other
notations are the same as in Fig. 1.</p></caption>
          <?xmltex \igopts{width=483.69685pt}?><graphic xlink:href="https://npg.copernicus.org/articles/24/125/2017/npg-24-125-2017-f03.png"/>

        </fig>

      <p>The stability of PE is different among partial SE settings, as shown in Figs. 2 and 3, as the time series of the ensemble mean of the estimated parameters.
Figs. 2b, c and 3b, c show the four successful cases with only atmospheric SE.
Compared to full SE (using observations of <inline-formula><mml:math id="M207" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M208" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>, shown in Figs. 2a
and 3a), the partial SE cases show much bigger fluctuation in estimated
parameter values at the beginning of spinup period (Figs. 2b, c and 3b, c).
From Figs. 2 and 3, it can also be seen that generally the accuracy of PE
with partial SE is lower although overall the estimated parameter values
converge to the truth. This can be comprehended by the lower signal-to-noise
ratio of state–parameter covariance provided by the SE process, which will
be discussed in more detail at the end of this section.</p>
      <p>The convergence rate of PE is also obviously different with different SE
settings. The case of <inline-formula><mml:math id="M209" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M210" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> converges much more slowly than the other
cases in <inline-formula><mml:math id="M211" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> estimation. This phenomenon can be explained by the
different timescales of different media. Figure 4 shows the variation of
the state variable during SE. The observational constraint makes the mean
value and the whole ensemble follow the truth (see Fig. 4a for
<inline-formula><mml:math id="M212" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and Fig. 4e  for <inline-formula><mml:math id="M213" display="inline"><mml:mrow><mml:mi>w</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. It can be seen that in cases assimilating <inline-formula><mml:math id="M214" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>,
due to no direct constraint on <inline-formula><mml:math id="M215" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M216" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>, their spread shrinks slowly.
Instead, they are forced by the constrained <inline-formula><mml:math id="M217" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> but with slower adjustment
of ocean processes. As mentioned in Sect. 2.3, the SE starts before the PE
to make sure the state needed is constrained enough. Slow shrinking of <inline-formula><mml:math id="M218" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>
and <inline-formula><mml:math id="M219" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula> spreads shall be considered in determining a longer delayed time
for the PE related to <inline-formula><mml:math id="M220" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M221" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>.</p>
      <p>The inflation method is also important in PE (Yang and DelSole, 2009;
DelSole and Yang, 2010; Zhang, 2011a, b; Zhang et al., 2012). The partial and
full SE cases use the same inflation scheme (Zhang, 2011a, b; Zhang et
al., 2012). Shadows in Figs. 1–3 show the range of the parameter ensemble.
The zigzag shape of the shadows represents the inflation during PE. In these
figures, the width of the shadows shrinks quickly once PE is activated, while
some of the mean values move toward the truth slowly (for example, Figs. 2c and 3b). Also from the zigzag shapes, we can see some inflation
effects before the parameter converges to the truth. All of these imply
that the designed PE is stable and its convergence rate is not very
sensitive to the inflation scheme.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><caption><p>Time series of the state variables from the
<inline-formula><mml:math id="M222" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M223" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> PE experiment, for <bold>(a)</bold> and <bold>(d)</bold> <inline-formula><mml:math id="M224" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, <bold>(b)</bold> and <bold>(e)</bold> <inline-formula><mml:math id="M225" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>, <bold>(c)</bold> and <bold>(f)</bold> <inline-formula><mml:math id="M226" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>. The upper
panels <bold>(a)</bold>, <bold>(b)</bold> and <bold>(c)</bold> are from the successful case with SE for <inline-formula><mml:math id="M227" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>,<inline-formula><mml:math id="M228" display="inline"><mml:msub><mml:mi/><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msub></mml:math></inline-formula>, and
the lower panels <bold>(d)</bold>, <bold>(e)</bold> and <bold>(f)</bold> are from the failed case with SE for <inline-formula><mml:math id="M229" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>. Any other
notations are the same as in Fig. 1.</p></caption>
          <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://npg.copernicus.org/articles/24/125/2017/npg-24-125-2017-f04.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5" specific-use="star"><caption><p>Time series of the ensemble of parameter <inline-formula><mml:math id="M230" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> from
the <inline-formula><mml:math id="M231" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M232" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (using <inline-formula><mml:math id="M233" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula> observations to estimate <inline-formula><mml:math id="M234" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> PE
experiment in four different state estimation settings:
<bold>(a)</bold> <inline-formula><mml:math id="M235" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M236" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> and  <inline-formula><mml:math id="M237" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>; <bold>(b)</bold> <inline-formula><mml:math id="M238" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> only; <bold>(c)</bold> <inline-formula><mml:math id="M239" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> and  <inline-formula><mml:math id="M240" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula> only; and <bold>(d)</bold> <inline-formula><mml:math id="M241" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>
only. Any other notations are the same as in Fig. 1.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://npg.copernicus.org/articles/24/125/2017/npg-24-125-2017-f05.png"/>

        </fig>

      <p>In addition, larger ensemble sizes are used to test the sensitivity of the
conclusion above. The results show that bigger ensemble size has a positive
impact on SE and PE quality but the drawn conclusion from the experiments
above does not change its essence. Also, the ensemble size far exceeds the
problem size in this simple model study. In this regard, further examination
may be necessary in CGCM cases. We also performed the experiments under
different SE update interval settings. Test results show that for the issue
we are addressing, the conclusion is not sensitive to the update interval if
it is within a reasonable range (<inline-formula><mml:math id="M242" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>-to-<inline-formula><mml:math id="M243" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M244" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M245" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> fail on any
update interval with SE of <inline-formula><mml:math id="M246" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> and succeed with SE of <inline-formula><mml:math id="M247" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in a SE interval
range of no larger than 0.3 TUs, for instance).</p>
      <p>In case-3 and case-4 of Table 1, we successfully estimate the oceanic parameter <inline-formula><mml:math id="M248" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>,
suggesting we can use different medium measurements to help calibrate the
parameter within a coupled model. In case-3, the atmospheric observations
are used for both SE and PE, while in case-4, the atmospheric observations
are used for SE but the oceanic observations are used for PE. Case-3
uses only the atmospheric observations to determine an oceanic parameter and
does a better job than when the oceanic observations are used in case-4.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><caption><p>Wavelet analyses for <bold>(a)</bold> <inline-formula><mml:math id="M249" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <bold>(b)</bold> <inline-formula><mml:math id="M250" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> in the truth
model run.</p></caption>
          <?xmltex \igopts{width=455.244094pt}?><graphic xlink:href="https://npg.copernicus.org/articles/24/125/2017/npg-24-125-2017-f06.png"/>

        </fig>

      <p>The phenomenon above, in estimation of <inline-formula><mml:math id="M251" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, can be comprehended by the
air–sea interaction process. What about a pure oceanic parameter (a
parameter used for deep ocean, for instance)? It is interesting to see the
influence of atmospheric SE accuracy on PE for a deep ocean parameter. To do
that, a series of <inline-formula><mml:math id="M252" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M253" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> PE experiments with different SE
settings is carried out. The deep ocean observation is generally sparse in
the real world. However, within our twin experiment framework described in
Sect. 2.3, the observations of <inline-formula><mml:math id="M254" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula> used for our PE can be produced
as sufficiently as other variables. All PE experiments on <inline-formula><mml:math id="M255" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> are conducted
with <inline-formula><mml:math id="M256" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula> observations (observations of <inline-formula><mml:math id="M257" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M258" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> are only used in
different SE but not used in the PE). The result is shown in Fig. 5. Given
the long timescale of <inline-formula><mml:math id="M259" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>, the <inline-formula><mml:math id="M260" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula> PE experiments are extended to
10<inline-formula><mml:math id="M261" display="inline"><mml:msup><mml:mi/><mml:mn mathvariant="normal">4</mml:mn></mml:msup></mml:math></inline-formula> TUs. The PE cases include four SE settings. They are case-1: all state
variables, case-2: <inline-formula><mml:math id="M262" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> only, case-3: <inline-formula><mml:math id="M263" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M264" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>, and case-4:  <inline-formula><mml:math id="M265" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula> only. Both case-1 and case-2 succeed greatly, but the convergence rate of
case-1 is faster than case-2 and the accuracy of case-1 is a little higher
than case-2. In case-3, the convergence rate is fast but the estimated
values remain in a bias from the truth. Case-4 apparently fails, never
stably converging to any value. It is clear that the <inline-formula><mml:math id="M266" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M267" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> PE
succeeds only when the atmospheric state is constrained by observations.</p>
      <p>It is interesting that once the atmospheric states (the Lorenz equation in
this simple model) are constrained by the observations, both the atmospheric
parameter (<inline-formula><mml:math id="M268" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and oceanic parameters (<inline-formula><mml:math id="M269" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and c<inline-formula><mml:math id="M270" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">6</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> can
be successfully estimated even in the case using the atmospheric
observations (<inline-formula><mml:math id="M271" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> to estimate the oceanic parameter (<inline-formula><mml:math id="M272" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> or using
the ocean observations (<inline-formula><mml:math id="M273" display="inline"><mml:mrow><mml:mi>w</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> to estimate the atmospheric parameter (<inline-formula><mml:math id="M274" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>.
This seems different from our previous intuition that in situ ocean data are
always considered as the first important piece of information for
determining the oceanic coefficients. Our results here strongly suggest that,
in the future, when real coupled model PE experiments are used for determining the best
coefficient values, no matter the atmospheric or oceanic parameters, sufficient and
accurate atmospheric measurements will be crucially important. Next, we will
conduct more sophisticate analyses to extend our understanding on this
point.</p>
      <p>In our twin experiment setting, there are three types of model uncertainties:
strong nonlinearity in the atmosphere (chaotic in this case), weaker
nonlinearity in the ocean and biased parameter values. The SE process before
PE aims to control the first and second types of uncertainties by putting
observational constraints on model states. Figure 6 shows the wavelet
analyses for the atmospheric variable <inline-formula><mml:math id="M275" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and the oceanic variable <inline-formula><mml:math id="M276" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> in
the truth run. They represent the uncertainties of type 1 (panel a) and
type 2 (panel b). With the expanded exhibition of the wavelet on different
periods, Fig. 6 clearly tells significantly different features of <inline-formula><mml:math id="M277" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M278" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>. The energy of <inline-formula><mml:math id="M279" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is in the high-frequency band and the energy of <inline-formula><mml:math id="M280" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> is
in the low-frequency band. <inline-formula><mml:math id="M281" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> varies fast and represents the most
uncertain mode, transferrable to low-frequency <inline-formula><mml:math id="M282" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> through the air–sea
interaction. Later in Sect. 3.2, we will show that the feedback of ocean
can magnify the role of atmospheric chaotic forcings. The chaotic nature can
spread out and result in uncertainties in all frequency bands in the system.
Under such a circumstance, the method of picking a particular frequency
(e.g., Barth et al., 2015) or using averaged covariance (Lu et al., 2015) to
implement PE cannot essentially resolve the issue although it may relax the
problem. Instead, reducing <inline-formula><mml:math id="M283" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> uncertainty (enhancing the
estimation accuracy of the atmospheric states) is more relevant to the
solution of the problem.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7" specific-use="star"><caption><p>Sampling map of the perturbed parameter anomalies in the
space of model state anomalies for <bold>(a)</bold> <inline-formula><mml:math id="M284" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> vs. <inline-formula><mml:math id="M285" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> , <bold>(b)</bold> <inline-formula><mml:math id="M286" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> vs.
<inline-formula><mml:math id="M287" display="inline"><mml:mrow><mml:msub><mml:mi>w</mml:mi><mml:mo>,</mml:mo></mml:msub></mml:mrow></mml:math></inline-formula> <bold>(c)</bold> <inline-formula><mml:math id="M288" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> vs. <inline-formula><mml:math id="M289" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <bold>(d)</bold> <inline-formula><mml:math id="M290" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> vs. <inline-formula><mml:math id="M291" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> when the atmospheric
state is constrained by its observations. Dots with the same color (red or
blue) represent ensembles at the same time step in the model integration.
The colored line represents a linear fitting for the same color dots. Here,
we show two examples that have a high positive (red) and negative (blue)
correlation between the parameter and model state perturbations,
respectively. The <inline-formula><mml:math id="M292" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> value shown in each panel is the time-averaged
parameter–state correlation coefficient in last 5000 time steps.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://npg.copernicus.org/articles/24/125/2017/npg-24-125-2017-f07.png"/>

        </fig>

      <p>Without direct observations of parameter values, PE completely relies on the
covariance between the parameter and model states for projecting the
observational information of states onto the parameter. While the PE
projection is carried out by a linear regression equation based on the
state–parameter covariance (EnKF/EAKF, for instance), only a linear or
quasi-linear relationship between parameters and states in the ensemble is
recognized. All failure of PE without direct atmospheric SE could be
attributed to the chaotic disturbances in the atmosphere (Lorenz equations
in this case) that create difficulties for the system to build up a
quasi-linear relationship between the state variable and the parameter.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T3" specific-use="star"><caption><p>List of <inline-formula><mml:math id="M293" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mrow><mml:mi>s</mml:mi><mml:mn mathvariant="normal">2</mml:mn><mml:mi>n</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> during the last 100 TUs
in eight SE-only (no PE) experiments.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="9">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="right"/>
     <oasis:colspec colnum="3" colname="col3" align="right"/>
     <oasis:colspec colnum="4" colname="col4" align="right"/>
     <oasis:colspec colnum="5" colname="col5" align="right"/>
     <oasis:colspec colnum="6" colname="col6" align="right"/>
     <oasis:colspec colnum="7" colname="col7" align="right"/>
     <oasis:colspec colnum="8" colname="col8" align="right"/>
     <oasis:colspec colnum="9" colname="col9" align="right"/>
     <oasis:thead>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2">S(1):</oasis:entry>  
         <oasis:entry colname="col3">S(2):</oasis:entry>  
         <oasis:entry colname="col4">S(3):</oasis:entry>  
         <oasis:entry colname="col5">S(4):</oasis:entry>  
         <oasis:entry colname="col6">F(5):</oasis:entry>  
         <oasis:entry colname="col7">F(6):</oasis:entry>  
         <oasis:entry colname="col8">F(7):</oasis:entry>  
         <oasis:entry colname="col9">F(8):</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M294" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> obs,</oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M295" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> obs,</oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M296" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> obs,</oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math id="M297" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> obs,</oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M298" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> obs,</oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math id="M299" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> obs,</oasis:entry>  
         <oasis:entry colname="col8"><inline-formula><mml:math id="M300" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> obs,</oasis:entry>  
         <oasis:entry colname="col9"><inline-formula><mml:math id="M301" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> obs,</oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">  
         <oasis:entry colname="col1"/>  
         <oasis:entry colname="col2"><inline-formula><mml:math id="M302" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>-to-<inline-formula><mml:math id="M303" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col3"><inline-formula><mml:math id="M304" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M305" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col4"><inline-formula><mml:math id="M306" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>-to-<inline-formula><mml:math id="M307" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col5"><inline-formula><mml:math id="M308" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M309" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col6"><inline-formula><mml:math id="M310" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>-to-<inline-formula><mml:math id="M311" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col7"><inline-formula><mml:math id="M312" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M313" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col8"><inline-formula><mml:math id="M314" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>-to-<inline-formula><mml:math id="M315" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col9"><inline-formula><mml:math id="M316" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M317" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M318" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">0.41</oasis:entry>  
         <oasis:entry colname="col3">0.33</oasis:entry>  
         <oasis:entry colname="col4">0.60</oasis:entry>  
         <oasis:entry colname="col5">0.91</oasis:entry>  
         <oasis:entry colname="col6">0.19</oasis:entry>  
         <oasis:entry colname="col7">0.19</oasis:entry>  
         <oasis:entry colname="col8">0.19</oasis:entry>  
         <oasis:entry colname="col9">0.24</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M319" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mtext>f</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M320" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M321" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mtext>p</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">0.65</oasis:entry>  
         <oasis:entry colname="col3">0.97</oasis:entry>  
         <oasis:entry colname="col4">0.98</oasis:entry>  
         <oasis:entry colname="col5">0.96</oasis:entry>  
         <oasis:entry colname="col6">0.19</oasis:entry>  
         <oasis:entry colname="col7">0.96</oasis:entry>  
         <oasis:entry colname="col8">0.29</oasis:entry>  
         <oasis:entry colname="col9">0.83</oasis:entry>
       </oasis:row>
       <oasis:row>  
         <oasis:entry colname="col1"><inline-formula><mml:math id="M322" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mrow><mml:mi>s</mml:mi><mml:mn mathvariant="normal">2</mml:mn><mml:mi>n</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula></oasis:entry>  
         <oasis:entry colname="col2">0.27</oasis:entry>  
         <oasis:entry colname="col3">0.32</oasis:entry>  
         <oasis:entry colname="col4">0.59</oasis:entry>  
         <oasis:entry colname="col5">0.87</oasis:entry>  
         <oasis:entry colname="col6">0.04</oasis:entry>  
         <oasis:entry colname="col7">0.18</oasis:entry>  
         <oasis:entry colname="col8">0.06</oasis:entry>  
         <oasis:entry colname="col9">0.20</oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p>To investigate the parameter–state relationship in the model background
(prior PE), we conduct a series of parameter perturbation runs corresponding
to eight partial SE experiments (without PE to fix the parameter spread – the
PE process sets the parameter ensemble as an additional system freedom and
makes the relationship of the parameter and model state more complicate). In
that way, the parameter perturbations can be fully transferred to the model
states so that we can study the state–parameter relationship in a straightforward
manner. The results are shown in Figs. 7 and 8, where the horizontal
axis is the ensemble anomaly (vs. ensemble mean) of the state variable and
the vertical axis is the ensemble anomaly of the parameter, and the
background black dots represent the model runs starting from different
initial conditions. Since the parameter ensemble does not change (once
perturbed at the initial time) during the model integration, the lines
constructed by black dots in a perturbation run are parallel to the <inline-formula><mml:math id="M323" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> axis
perfectly. However, the set of dots at the same integration time step from
different initial conditions can be used to sample the relationship between
the perturbed parameter and the model state. For example, two sets of such
ensembles, which have the biggest positive and negative correlation
coefficients between the parameters and the model states, are colored (20
red dots and 20 blue dots) in each case. From Fig. 7, we can see that with
SE for the atmosphere, the overall quasi-linear relationship between the
model state anomalies (observational increments) and the parameter
adjustments is constructed by the model. Under this circumstance, a
meaningful projection from the observational increment on the parameter is
gained to form a signal-dominant adjustment for the parameter ensemble. As
shown in Fig. 8, without the atmosphere SE, the linear relationship between
the parameter being estimated and the model states is not correctly built
up, and thus the parameter estimation fails.</p>
      <p>The relationship between the states and the parameters can be analyzed
quantitatively. Zhang et al. (2012) defined an ad hoc index to measure the
signal-to-noise ratio (called <inline-formula><mml:math id="M324" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mrow><mml:mi>s</mml:mi><mml:mn mathvariant="normal">2</mml:mn><mml:mi>n</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> of a model ensemble. Following the
idea, we diagnose the signal-to-noise ratio of the ensemble-based error
covariance between the states and parameters here. The new <inline-formula><mml:math id="M325" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mrow><mml:mi>s</mml:mi><mml:mn mathvariant="normal">2</mml:mn><mml:mi>n</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is
defined as <inline-formula><mml:math id="M326" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> <inline-formula><mml:math id="M327" display="inline"><mml:mo>×</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M328" display="inline"><mml:mi>S</mml:mi></mml:math></inline-formula>, where <inline-formula><mml:math id="M329" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> is the averaged correlation coefficient
between the parameter perturbations and the ensemble states in a selected
time window, and <inline-formula><mml:math id="M330" display="inline"><mml:mi>S</mml:mi></mml:math></inline-formula> is the ratio of root mean square linear fitting errors of
the parameter–state points in the full SE and in a partial SE
(<inline-formula><mml:math id="M331" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mtext>f</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M332" display="inline"><mml:mo>/</mml:mo></mml:math></inline-formula> <inline-formula><mml:math id="M333" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mtext>p</mml:mtext></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. The best (worst) representation of the signal-to-noise
ratio is then characterized by a <inline-formula><mml:math id="M334" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mrow><mml:mi>s</mml:mi><mml:mn mathvariant="normal">2</mml:mn><mml:mi>n</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> value of 1(0). Table 3 gives the
<inline-formula><mml:math id="M335" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mrow><mml:mi>s</mml:mi><mml:mn mathvariant="normal">2</mml:mn><mml:mi>n</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> values for the SE-only experiments of Figs. 7 and 8. Correlation
coefficients of F(5) and F(8) are 0.19 and 0.24, respectively. Though the
dependences of <inline-formula><mml:math id="M336" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> on <inline-formula><mml:math id="M337" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in F(5) and <inline-formula><mml:math id="M338" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> on <inline-formula><mml:math id="M339" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in F(8) are fairly
direct, the low <inline-formula><mml:math id="M340" display="inline"><mml:mi>R</mml:mi></mml:math></inline-formula> values suggest these relations can be easily interrupted
by the atmospheric uncertainty. The values of <inline-formula><mml:math id="M341" display="inline"><mml:mrow><mml:msub><mml:mi>r</mml:mi><mml:mrow><mml:mi>s</mml:mi><mml:mn mathvariant="normal">2</mml:mn><mml:mi>n</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> are much higher in
the successful cases than in the failed cases. These results clearly show
that reduction of the atmospheric uncertainty can greatly increase the
signal-to-noise ratio of the parameter–state covariance in the system
through enhancing the bonding between the state variable and the estimated
parameter.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><caption><p>The same as Fig. 7 but for the case with SE of <inline-formula><mml:math id="M342" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> only: <bold>(a)</bold> <inline-formula><mml:math id="M343" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> vs. <inline-formula><mml:math id="M344" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <bold>(b)</bold> <inline-formula><mml:math id="M345" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> vs. <inline-formula><mml:math id="M346" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>.
Here, we show two examples that the
linear fitting becomes difficult in red and blue, for which the data are
taken from the same time steps as shown in Fig. 7.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://npg.copernicus.org/articles/24/125/2017/npg-24-125-2017-f08.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9" specific-use="star"><caption><p>Wavelet analyses for <inline-formula><mml:math id="M347" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> in the run of one-way coupling
model forced by <bold>(a)</bold> <inline-formula><mml:math id="M348" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi>s</mml:mi></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 1 and <bold>(b)</bold> <inline-formula><mml:math id="M349" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi>s</mml:mi></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 250.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://npg.copernicus.org/articles/24/125/2017/npg-24-125-2017-f09.png"/>

        </fig>

</sec>
<sec id="Ch1.S3.SS2">
  <title>Impact of the chaotic-to-periodic ratio in forcings on oceanic
PE</title>
      <p>From the results above, we learned that the PE of <inline-formula><mml:math id="M350" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> or <inline-formula><mml:math id="M351" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> strongly
relies on the SE of <inline-formula><mml:math id="M352" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula>. In a coupled system characterized as Eq. (1), the
influence of atmosphere can thoroughly propagate to all variables of other
media, although the influence may reduce for the deep ocean. However, some
previous studies (e.g., Annan et al., 2005; Barth et al., 2015; Gharamti et
al., 2014; Leeuwenburgh, 2008; Massonnet et al., 2014) show their
success in estimating parameters in ocean only using oceanic
observations without constraints on atmospheric states. To understand what
character of the model makes this difference, we make full use of this
simple model with convenience to investigate the influence of model
characteristics on coupled parameter estimation. For mimicking the real
climate signals, the variability of the oceanic state variables <inline-formula><mml:math id="M353" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M354" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>
in Eq. (1) are driven by two kinds of forcings: the chaotic forcing from the
atmosphere (Lorenz equations) and the periodic forcing associated with the
external radiative forcing (simulated by a cosine function with the
amplitude coefficient of <inline-formula><mml:math id="M355" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi>s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> in this simple model). The oceanic states
in the real world consist of both periodic and chaotic variations. The
periodic characteristic of a state is naturally with high predictability and
is generally easier to be detected after an averaging or filtering process.
In this simple model, <inline-formula><mml:math id="M356" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> (<inline-formula><mml:math id="M357" display="inline"><mml:mrow><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> is directly under the influence of the
parameter <inline-formula><mml:math id="M358" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M359" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> – perturbations of <inline-formula><mml:math id="M360" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (<inline-formula><mml:math id="M361" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> first directly
affecting <inline-formula><mml:math id="M362" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> (<inline-formula><mml:math id="M363" display="inline"><mml:mrow><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and then influencing the whole model by the
interactions between <inline-formula><mml:math id="M364" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> (<inline-formula><mml:math id="M365" display="inline"><mml:mrow><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and other variables. To understand the
influence of chaotic/periodic variability of the ocean on oceanic parameter
estimation, we modify the model in Appendix A to set a one-way coupling
model; i.e., only <inline-formula><mml:math id="M366" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> is forced by <inline-formula><mml:math id="M367" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> but <inline-formula><mml:math id="M368" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> remains independent from <inline-formula><mml:math id="M369" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>. In that
way, we do not need to worry about the instability of Lorenz equations due to
the dramatic influence from large <inline-formula><mml:math id="M370" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> values. Then, we define a
chaotic-to-periodic ratio (CPR) in the signals of <inline-formula><mml:math id="M371" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> (<inline-formula><mml:math id="M372" display="inline"><mml:mrow><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> to study the PE
performance under the different chaotic/periodic variability regimes of a model
system. Details of the CPR definition are given in Appendix B. The CPR of <inline-formula><mml:math id="M373" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>
(<inline-formula><mml:math id="M374" display="inline"><mml:mrow><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> can be easily manipulated by changing the coefficient of
<inline-formula><mml:math id="M375" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi>s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. We first compare the results of <inline-formula><mml:math id="M376" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> in one-way coupling (Fig. 9a) and
two-way coupling (Fig. 6b) models with the identical <inline-formula><mml:math id="M377" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi>s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> value of 1. The
CPR in the full period (from 0.3 to 165 TUs, the longest period that is
selected to avoid boundary effects) of <inline-formula><mml:math id="M378" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> in Fig. 9a is 1.0963. It is
interesting that the one-way coupling (without the feedback of <inline-formula><mml:math id="M379" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> to <inline-formula><mml:math id="M380" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in the
model) can transfer more energy to low-frequency band. Then, we perform eight
PE experiments, four for <inline-formula><mml:math id="M381" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M382" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and four for <inline-formula><mml:math id="M383" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M384" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. We
examine four <inline-formula><mml:math id="M385" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi>s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> values of 100, 250, 500 and 1000, representing a reduced
CPR sequence of <inline-formula><mml:math id="M386" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> (<inline-formula><mml:math id="M387" display="inline"><mml:mrow><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. Their CPR values are, respectively, 1.0485
(0.6084), 1.0386 (0.6083), 1.0333 (0.6081) and 1.0282 (0.6080). Note that the
CPR value will change once a PE process is activated. We compare these
one-way coupling model results and show two examples (<inline-formula><mml:math id="M388" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi>s</mml:mi></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 1 and
<inline-formula><mml:math id="M389" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi>s</mml:mi></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 250, Fig. 9a, b for <inline-formula><mml:math id="M390" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>; Fig. 10a, b for <inline-formula><mml:math id="M391" display="inline"><mml:mrow><mml:mi mathvariant="italic">η</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>. We found that the
increasing amplitude of periodic forcing can enhance the periodic signals
for <inline-formula><mml:math id="M392" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M393" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>. Clearly, when the <inline-formula><mml:math id="M394" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula> CPR decreases, the periodic
portion dominates and the <inline-formula><mml:math id="M395" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M396" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> PE becomes more and more robust
(see Fig. 11a–d). However, in the other four <inline-formula><mml:math id="M397" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M398" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> cases, for any <inline-formula><mml:math id="M399" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> CPR, the
<inline-formula><mml:math id="M400" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M401" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> PE fails (Fig. 12a).  This is due to strong dependence of cov(<inline-formula><mml:math id="M402" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>,
<inline-formula><mml:math id="M403" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> (the covariance between <inline-formula><mml:math id="M404" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M405" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> on <inline-formula><mml:math id="M406" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (see Eq. 1) that is
still chaotic without observational constraint. Though <inline-formula><mml:math id="M407" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> is very periodic,
the chaotic variability of <inline-formula><mml:math id="M408" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> sheds on the variability of <inline-formula><mml:math id="M409" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> (the needed
variability of <inline-formula><mml:math id="M410" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> for PE should come from <inline-formula><mml:math id="M411" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> but now comes from the
chaotic <inline-formula><mml:math id="M412" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> and makes the PE process misjudge the difference between the
simulated <inline-formula><mml:math id="M413" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> and its observation, thus not producing a correct PE projection.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10" specific-use="star"><caption><p>Time series of  <inline-formula><mml:math id="M414" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula> with different <inline-formula><mml:math id="M415" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi>s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> values
(varying from 100 to 1000) with a one-way coupling model setting described
in Appendix A. To visualize the difference induced by different <inline-formula><mml:math id="M416" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi>s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> values, panel <bold>(b)</bold> is the zoomed out version of the section marked in red in
panel <bold>(a)</bold>.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://npg.copernicus.org/articles/24/125/2017/npg-24-125-2017-f10.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F11" specific-use="star"><caption><p>Time series of the ensemble of parameter <inline-formula><mml:math id="M417" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in four
<inline-formula><mml:math id="M418" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M419" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> PE experiments with different <inline-formula><mml:math id="M420" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi>s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> values: <bold>(a)</bold> 100, <bold>(b)</bold> 250,
<bold>(c)</bold> 500 and <bold>(d)</bold> 1000 with the one-way coupling model setting. In all cases,
only <inline-formula><mml:math id="M421" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula> is constrained by its  observations. Any other notations are same
as in Fig. 1.</p></caption>
          <?xmltex \igopts{width=369.885827pt}?><graphic xlink:href="https://npg.copernicus.org/articles/24/125/2017/npg-24-125-2017-f11.png"/>

        </fig>

      <?xmltex \floatpos{t}?><fig id="Ch1.F12" specific-use="star"><caption><p>Time series of the ensemble of the parameter in the <bold>(a)</bold> <inline-formula><mml:math id="M422" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M423" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> PE with SE
of <inline-formula><mml:math id="M424" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> only and <bold>(b)</bold> <inline-formula><mml:math id="M425" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M426" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> PE with SE of <inline-formula><mml:math id="M427" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>
only using the one-way coupling model with <inline-formula><mml:math id="M428" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi>s</mml:mi></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 250. Note that the
initial <inline-formula><mml:math id="M429" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in panel <bold>(a)</bold> is approximately 0.56, and the truth is 1. Any
other notations are same as in Fig. 1.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://npg.copernicus.org/articles/24/125/2017/npg-24-125-2017-f12.png"/>

        </fig>

      <p>To further test the role of periodic signals in ocean states for oceanic PE,
we conduct oceanic PE on a particular frequency band using the method
described in Appendix C. Some results are shown in Fig. 12 which shows that
using the covariance of <inline-formula><mml:math id="M430" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula> in a particular frequency and <inline-formula><mml:math id="M431" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> to
project the corresponding <inline-formula><mml:math id="M432" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula> observational information can make a
<inline-formula><mml:math id="M433" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M434" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> PE case with <inline-formula><mml:math id="M435" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi>s</mml:mi></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 250 as successful as the result
of <inline-formula><mml:math id="M436" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi>s</mml:mi></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 1000 with full frequencies (compare Fig. 12b to 11d). The
method is designed to limit the PE process working on the 10-TU period of
<inline-formula><mml:math id="M437" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula> information, which dramatically reduces the CPR of <inline-formula><mml:math id="M438" display="inline"><mml:mrow><mml:mi>w</mml:mi><mml:mi mathvariant="italic">η</mml:mi></mml:mrow></mml:math></inline-formula> (the CPR
of <inline-formula><mml:math id="M439" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula> now is 0.1424, and the CPR of <inline-formula><mml:math id="M440" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> is 1.0525 at the beginning of the
PE) and thus helps <inline-formula><mml:math id="M441" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> estimation, but given strong dependence of
cov(<inline-formula><mml:math id="M442" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>, <inline-formula><mml:math id="M443" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> on <inline-formula><mml:math id="M444" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mrow><mml:mn mathvariant="normal">2</mml:mn><mml:mo>,</mml:mo></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> and that the CPR of <inline-formula><mml:math id="M445" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is big on every
frequency band, this particular frequency PE method does not help for
estimation of <inline-formula><mml:math id="M446" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> (Fig. 12a).</p>
</sec>
</sec>
<sec id="Ch1.S4" sec-type="conclusions">
  <title>Conclusion and discussions</title>
      <p>The erroneous values of parameters in a coupled model are a source of model
bias that can cause model climate drift. Model bias can be mitigated by
PE with observational data. The signal-to-noise ratio
in state–parameter covariance plays a centrally important role in the PE
process. With a conceptual coupled model, we discuss the issue of how to
enhance the signal-to-noise ratio in coupled model PE through further
understanding of various aspects of the PE process in a coupled numerical
system.</p>
      <p>We performed three kinds of comparisons to discuss the issue. The first kind
focuses on the PE performance with a two-way coupling model. Results show
that atmospheric SE is critically important. The second
comparison is carried out by the experiments with the same parameter spread
and SE settings as in the first comparison but without the PE process. We use
this method to examine the signal-to-noise ratio of state–parameter covariance
in different SE settings. Results find that the projection of the
observational increment onto the parameter can be easily interrupted under
partial SE conditions. In the third kind, we changed the model structure
from two-way coupling to one-way coupling, allowing the ocean state to vary
forced by the atmosphere without feedback to the chaotic atmosphere. The PE
results are better with higher periodic and less chaotic states.</p>
      <p>According to all these comparisons, first, we found that due to the
interaction of multiple timescales in our conceptual coupled model, the
fast-varying component is the major source for producing an inaccurate
state–parameter covariance in the system. Enhancing the estimation accuracy
of high-frequency states that interact with the parameter is the most
important factor to maintain a signal-dominated relationship between the parameter
being estimated and model states, and allows for successful coupled model
parameter estimation. Second, the chaotic-to-periodic ratio (CPR) of the
model state that closely associates with the parameter being estimated
determines the required state estimation accuracy. Given limited
observational resources, in the future when we work with a realistic model and
observing system, the CPR shall be first investigated to increase the
opportunities of having successful parameter estimation.</p>
      <p>Given the fact that observations are always imperfect, this conceptual
coupled model study tries to provide some general guidelines for CGCM PE
application with the real observing system. However, the results have the
following limitations:
<list list-type="order"><list-item>
      <p>The conceptual coupled model assumes that only the
atmosphere is a chaotic uncertainty source. In the real world, this is
unnecessarily true (nonlinearity produced by smaller-scale eddies in the
ocean could be the part of chaotic uncertainty sources too, for instance).</p></list-item><list-item>
      <p>The atmosphere–ocean interaction is idealized in the conceptual model. In
the real world, the air–sea coupling could be complex as it is highly
geographically dependent.</p></list-item><list-item>
      <p>The twin experiment assumes that except for the parameters to
be estimated, the model “dynamical core” and “physics” are perfect and
consistent with the observation. In the real world, the CGCM is biased
from the observations.</p></list-item></list>
All these aspects still need to be addressed before
coupled model PE is applied to a CGCM with the real observing system.</p>
      <p>How the accuracy of state estimation impacts on the coupled model parameter
estimation is an interesting and challenging research topic. The spatial and
temporal dependence of atmospheric and oceanic circulations could further
complicate the issue. For example, the Kuroshio meander in the south of
Japan is very different to the Kuroshio meander across the Luzon Strait. The
Kuroshio across the Luzon Strait is easily interrupted by the monsoon, but the
meander in the south of Japan is a self-sustained dynamic system having
multiple equilibria with non-periodic state changes (Taft, 1972; Yu et al.,
2013); the uncertainty of the latter comes from the accumulation of the
negative vorticities in the ocean. Further, we have already known that the
method on a particular frequency can increase the opportunity of
success. When such a real problem is addressed through the PE with a
CGCM, we may need to make efforts on both adaptive measurements and spectral
separation. The PE method shall be improved to perform separately at
different timescales. How to speed up the convergent rate in the coupled
model PE process is also an important issue. All of these require further
research work in order to be clarified.</p>
</sec>
<sec id="Ch1.S5">
  <title>Data availability</title>
      <p>We use wavelet analysis to exhibit the CPR of different states. Some related wavelet
methods and additional useful examples are available at <uri>www.glaciology.net/wavelet-coherence</uri> (Grinsted et al., 2004).
The source code of the wavelet toolbox can be downloaded at <uri>www.mathworks.com/matlabcentral/fileexchange/47985-cross-wavelet-and-wavelet-coherence?download=true</uri>.</p><?xmltex \hack{\clearpage}?>
</sec>

      
      </body>
    <back><app-group>

<app id="App1.Ch1.S1">
  <title>One-way coupling model</title>
      <p>A suitable scope of parameter values that maintain the model character is an
important precondition for successful PE. For example, in Eq. (1) when
<inline-formula><mml:math id="M447" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> is lower than 20, the variation of <inline-formula><mml:math id="M448" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> becomes periodic and
loses the chaotic nature. When the values of the parameter of some ensemble
members are numerically out of bound, different ensemble members exhibit
different dynamic performance (some of them are chaotic and the rest are
periodic) and the state–parameter covariance computed from the ensemble
becomes unreasonable and PE must fail. In <inline-formula><mml:math id="M449" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> PE experiments, the
values are bounded within 24–32 where nonlinearity and
characteristic variability of the model is maintained. For the purpose of
manipulating the signal <inline-formula><mml:math id="M450" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> or <inline-formula><mml:math id="M451" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>, to make them become more periodic than
chaotic, we changed the parameter <inline-formula><mml:math id="M452" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi>s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> to magnify the amplitude of the
cosine term that directly forces <inline-formula><mml:math id="M453" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula>. This causes the value of <inline-formula><mml:math id="M454" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> to grow bigger
according to different <inline-formula><mml:math id="M455" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi>s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> settings. At the same time, the original
two-way coupling has to be changed to one-way coupling by removing the <inline-formula><mml:math id="M456" display="inline"><mml:mi>w</mml:mi></mml:math></inline-formula> in
the <inline-formula><mml:math id="M457" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> equation, which interacts with <inline-formula><mml:math id="M458" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in the Lorenz equation, for
maintaining the ability of producing the chaotic signal. The reference <inline-formula><mml:math id="M459" display="inline"><mml:mrow><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
equation after the modification is

              <disp-formula id="App1.Ch1.E1" content-type="numbered"><mml:math id="M460" display="block"><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:msub><mml:mover accent="true"><mml:mi>x</mml:mi><mml:mo mathvariant="normal">˙</mml:mo></mml:mover><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>=</mml:mo><mml:mo>-</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">3</mml:mn></mml:msub><mml:mo>+</mml:mo><mml:mo>(</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>+</mml:mo><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>)</mml:mo><mml:msub><mml:mi>a</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>x</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>

        Therefore, when using Eq. (A1), the Lorenz atmosphere cannot feel the
variation of the ocean. The strength of the chaotic forcing remains the same
in all cases with different <inline-formula><mml:math id="M461" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi>s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> settings, and because the Lorenz
atmosphere runs independently, there is no need to set scope limits of the
oceanic parameters <inline-formula><mml:math id="M462" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi>s</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M463" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M464" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> for securing the chaotic
character of the system under this circumstance. The oceanic parameters can
be perturbed much larger than in the two-way coupled cases.</p>
</app>

<app id="App1.Ch1.S2">
  <title>Definition of CPR</title>
      <p>A chaotic nature naturally lowers predictability of the signal. The
chaotic-to-periodic ratio (CPR) is defined to measure the chaotic degree of
a system within a particular period band as

              <disp-formula id="App1.Ch1.E2" content-type="numbered"><mml:math id="M465" display="block"><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mi mathvariant="normal">CPR</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>-</mml:mo><mml:msub><mml:mi>T</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow></mml:mfrac></mml:mstyle><mml:munderover><mml:mo movablelimits="false">∫</mml:mo><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:mrow><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:munderover><mml:mi mathvariant="normal">SD</mml:mi><mml:mo mathvariant="italic">{</mml:mo><mml:msub><mml:mi>log⁡</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mo>[</mml:mo><mml:mi>P</mml:mi><mml:mo>(</mml:mo><mml:mi>T</mml:mi><mml:mo>)</mml:mo><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>]</mml:mo><mml:mo mathvariant="italic">}</mml:mo><mml:mi mathvariant="normal">d</mml:mi><mml:mi>T</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>

        where <inline-formula><mml:math id="M466" display="inline"><mml:mi>P</mml:mi></mml:math></inline-formula> is the wavelet power spectrum of the selected state variable on the
period of <inline-formula><mml:math id="M467" display="inline"><mml:mi>T</mml:mi></mml:math></inline-formula>, and SD denotes the standard deviation (of the base-2 logarithm
of <inline-formula><mml:math id="M468" display="inline"><mml:mi>P</mml:mi></mml:math></inline-formula> performed along a time window, plus one to ensure the positive definite function for the
logarithm result). The wavelet transformation is able to identify period
components simultaneously with their location and time. The CPR is a
positive definite indicator. Its value is 0 for a pure periodic signal.</p>
</app>

<app id="App1.Ch1.S3">
  <title>PE method on a particular frequency band</title>
      <p>Previous studies have shown that applying the PE with an averaged covariance
in a particular time window can increase the signal-to-noise ratio (Lu et al.,
2015, Barth et al., 2015). In our case, it can also effectively increase the
CPR of the state variable. Here, we propose an alternative method that has
a similar effect to an averaged covariance but is much easier to be
implemented. This method applies PE on a particular frequency. The method
succeeds in enhancing the CPR by using a designed filter on both the
observations and the simulated ensemble results, and it can allow
information focusing on a particular frequency more accurately than using
the averaging method.</p>
      <p>In this study, for the <inline-formula><mml:math id="M469" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M470" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> PE case with <inline-formula><mml:math id="M471" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mi>s</mml:mi></mml:msub><mml:mo>=</mml:mo></mml:mrow></mml:math></inline-formula> 250, the
periodic signal produced by the cosine function has a period of 10 TUs (1000
time steps, defined by <inline-formula><mml:math id="M472" display="inline"><mml:mrow><mml:msub><mml:mi>S</mml:mi><mml:mtext>pd</mml:mtext></mml:msub></mml:mrow></mml:math></inline-formula> in Eq. 1; also see Fig. 10) and the
chaotic signal is much slower than the periodic signal. In other words, the
signal-to-noise ratio of <inline-formula><mml:math id="M473" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula> is strongest on the period of 10 TUs.
Therefore, we designed a Butterworth high-pass filter (BF) with a frequency
pass band equal to and larger than Fs/1000 (Fs is the frequency of sampling) to
help the PE of <inline-formula><mml:math id="M474" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M475" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>. The parameter update interval in the new
PE method is identical to the standard full-frequency PE case, but for each
update step, before they are applied to Eqs. (2) and (3), the observation and
simulated ensemble results are filtered by the following BF process:

              <disp-formula specific-use="align" content-type="numbered"><mml:math id="M476" display="block"><mml:mtable displaystyle="true"><mml:mtr><mml:mtd><mml:mstyle displaystyle="true" class="stylechange"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mtext>old:</mml:mtext><mml:mi mathvariant="normal">Δ</mml:mi><mml:msubsup><mml:mi>y</mml:mi><mml:mi>i</mml:mi><mml:mi>o</mml:mi></mml:msubsup><mml:mo>=</mml:mo><mml:mrow class="chem"><mml:mi mathvariant="normal">PE</mml:mi></mml:mrow><mml:mo>(</mml:mo><mml:msup><mml:mi>y</mml:mi><mml:mi>o</mml:mi></mml:msup><mml:mo>,</mml:mo><mml:msubsup><mml:mi>y</mml:mi><mml:mi>i</mml:mi><mml:mi>p</mml:mi></mml:msubsup><mml:mo>)</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mtr><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mtext>new:</mml:mtext><mml:mi mathvariant="normal">Δ</mml:mi><mml:msubsup><mml:mi>y</mml:mi><mml:mi>i</mml:mi><mml:mi>o</mml:mi></mml:msubsup><mml:mo>=</mml:mo><mml:mrow class="chem"><mml:mi mathvariant="normal">PE</mml:mi></mml:mrow><mml:mfenced close="]" open="["><mml:mi mathvariant="normal">Filter</mml:mi><mml:mo>(</mml:mo><mml:msup><mml:mi>y</mml:mi><mml:mi>o</mml:mi></mml:msup><mml:mo>)</mml:mo><mml:mo>,</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">Filter</mml:mi><mml:mo>(</mml:mo><mml:msubsup><mml:mi>y</mml:mi><mml:mi>i</mml:mi><mml:mi>p</mml:mi></mml:msubsup><mml:mo>)</mml:mo></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mtr><mml:mlabeledtr id="App1.Ch1.E3"><mml:mtd/><mml:mtd><mml:mstyle class="stylechange" displaystyle="true"/></mml:mtd><mml:mtd><mml:mrow><mml:mstyle displaystyle="true" class="stylechange"/><mml:mo>(</mml:mo><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>∼</mml:mo><mml:mi>N</mml:mi><mml:mo>,</mml:mo><mml:mi>N</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mtext>is the ensemble size</mml:mtext><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

          where <inline-formula><mml:math id="M477" display="inline"><mml:mrow><mml:msup><mml:mi>y</mml:mi><mml:mi>o</mml:mi></mml:msup></mml:mrow></mml:math></inline-formula> is the observation and <inline-formula><mml:math id="M478" display="inline"><mml:mrow><mml:msubsup><mml:mi>y</mml:mi><mml:mi>i</mml:mi><mml:mi>p</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> represents the simulated
ensemble results. The BF is applied within a 5000-step (or more) moving
window. It means that on each PE step, the last 5000 observations and the
simulated ensemble results in the same window are transformed through the
same BF to produce new observations (hobs) and new simulated results (hens)
on the particular frequency. Then, the new <inline-formula><mml:math id="M479" display="inline"><mml:mrow><mml:mi mathvariant="normal">Δ</mml:mi><mml:msubsup><mml:mi>y</mml:mi><mml:mi>i</mml:mi><mml:mi>o</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> is
computed from the hobs and the hens, and it is used with the covariance to
determine the adjustment of the parameter. This new method can be used for
different frequency bands (low pass, high pass or band pass), and it succeeds
in improving the PE performance in our one-way coupling experiment for the
<inline-formula><mml:math id="M480" display="inline"><mml:mi mathvariant="italic">η</mml:mi></mml:math></inline-formula>-to-<inline-formula><mml:math id="M481" display="inline"><mml:mrow><mml:msub><mml:mi>c</mml:mi><mml:mn mathvariant="normal">6</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> PE (Fig. 12b).
<?xmltex \hack{\clearpage}?></p>
</app>
  </app-group><notes notes-type="competinginterests">

      <p>The authors declare that they have no conflict of interest.</p>
  </notes><ack><title>Acknowledgements</title><p>This work is funded by the National Natural Science Foundation of China
(41306004), China's National Basic Research Priorities Programmer
(2013CB956202) and the National Natural Science Foundation of China
(41490640; 41490641).
<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?>
Edited by: A. Turiel <?xmltex \hack{\newline}?>
Reviewed by:  five anonymous referees</p></ack><ref-list>
    <title>References</title>

      <ref id="bib1.bib1"><label>1</label><mixed-citation>
Anderson, J.: An ensemble adjustment Kalman filter for data assimilation,
Mon. Weather Rev., 129, 2884–2903, 2001.</mixed-citation></ref>
      <ref id="bib1.bib2"><label>2</label><mixed-citation>
Anderson, J.: A local least squares framework for ensemble filtering, Mon. Weather Rev., 131, 634–642, 2003.</mixed-citation></ref>
      <ref id="bib1.bib3"><label>3</label><mixed-citation>Annan, J. D., Lunt, D. J., Hargreaves, J. C., and Valdes, P. J.: Parameter estimation in an atmospheric GCM using the
Ensemble Kalman Filter, Nonlin. Processes Geophys., 12, 363–371, <ext-link xlink:href="http://dx.doi.org/10.5194/npg-12-363-2005" ext-link-type="DOI">10.5194/npg-12-363-2005</ext-link>, 2005.</mixed-citation></ref>
      <ref id="bib1.bib4"><label>4</label><mixed-citation>
Barth, A., Canter, M., Schaeybroeck, B. V., Vannitsem, S., Massonnet, F.,
Zunz, V., Mathiot, P., Alvera-Azcarate, A., and Beckers, J.: Assimilation of
sea surface temperature, sea ice concentration and sea ice drift in a model
of the Southern Ocean, Ocean Modell., 93, 22–39, 2015.</mixed-citation></ref>
      <ref id="bib1.bib5"><label>5</label><mixed-citation>
Dee, D. P.: Bias and data assimilation, Q. J.  Roy. Meteorol. Soc., 131.613, 3323–3344, 2005.</mixed-citation></ref>
      <ref id="bib1.bib6"><label>6</label><mixed-citation>
Dee, D. P. and Silva, A. M. D.: Data assimilation in the presence of
forecast bias, Q. J.  Roy. Meteorol. Soc., 124.545,
269–296, 1998.</mixed-citation></ref>
      <ref id="bib1.bib7"><label>7</label><mixed-citation>
DelSole, T. and Yang, X.: State and parameter estimation in stochastic
dynamical models, Physica D, 239, 1781–1788, 2010.</mixed-citation></ref>
      <ref id="bib1.bib8"><label>8</label><mixed-citation>
Evensen, G.: Sequential data assimilation with a nonlinear
quasi-geostrophic model using Monte Carlo methods to forecast error
statistics, J. Geophys. Res., 99, 10143–10162, 1994.</mixed-citation></ref>
      <ref id="bib1.bib9"><label>9</label><mixed-citation>
Gharamti, M. E., Kadoura, A., Valstar, J., Sun, S., and Hoteit, I.: Constraining
a compositional flow model with flow-chemical data using an ensemble-based
Kalman filter, Water Resour. Res., 50, 2444–2467, 2014.</mixed-citation></ref>
      <ref id="bib1.bib10"><label>10</label><mixed-citation>
Gnanadesikan, A.: A simple predictive model for the structure of the oceanic
psycnocline, Science, 283, 2077–2079, 1999.</mixed-citation></ref>
      <ref id="bib1.bib11"><label>11</label><mixed-citation>Grinsted, A., Moore, J. C., and Jevrejeva, S.: Application of the cross wavelet transform and wavelet coherence
to geophysical time series, Nonlin. Processes Geophys., 11, 561–566,
<ext-link xlink:href="http://dx.doi.org/10.5194/npg-11-561-2004" ext-link-type="DOI">10.5194/npg-11-561-2004</ext-link>, 2004 (data available at: <uri>www.glaciology.net/wavelet-coherence</uri>, last access: 2 March 2017).</mixed-citation></ref>
      <ref id="bib1.bib12"><label>12</label><mixed-citation>
Han, G., Wu, X., Zhang, S., Liu, Z., and Li, W.: Error covariance estimation
for coupled data assimilation using a Lorenz atmosphere and a simple
psycnocline ocean model, J. Climate, 26, 10218–10231, 2013.</mixed-citation></ref>
      <ref id="bib1.bib13"><label>13</label><mixed-citation>
Houtekamer, P. L. and Mitchell, H. L: Data assimilation using an ensemble
Kalman filter technique, Mon. Weather Rev., 126, 796–811, 1998.</mixed-citation></ref>
      <ref id="bib1.bib14"><label>14</label><mixed-citation>
Jackson, C., Sen, M. K., and Stoffa, P. L.: An efficient stochastic Bayesian
approach to optimal parameter and uncertainty estimation for climate model
predictions, J. Climate, 17, 2828–2841, 2004.</mixed-citation></ref>
      <ref id="bib1.bib15"><label>15</label><mixed-citation>
Jazwinski, A.: Stochastic Processes and Filtering Theory, Academic Press,
Cambridge, 1970.</mixed-citation></ref>
      <ref id="bib1.bib16"><label>16</label><mixed-citation>
Jung, Y., Xue, M., and Zhang G.: Simultaneous estimation of microphysical
parameters and the atmospheric state using simulated polarimetric radar data
and an ensemble Kalman filter in the presence of an observation operator
error, Mon. Weather Rev., 138, 539–562, 2010.</mixed-citation></ref>
      <ref id="bib1.bib17"><label>17</label><mixed-citation>
Leeuwenburgh, O.: Estimation and correction of surface wind-stress bias in
the Tropical Pacific with the Ensemble Kalman Filter, Tellus A, 60,
716–727, 2008.</mixed-citation></ref>
      <ref id="bib1.bib18"><label>18</label><mixed-citation>
Li, S., Zhang, S., Liu, Z., Yang, X., Rosati, A., Golaz, J., and Zhao M.: The
Role of large-scale feedbacks in cumulus convection parameter estimation, J.
Climate, 29, 4099–4119, 2016.</mixed-citation></ref>
      <ref id="bib1.bib19"><label>19</label><mixed-citation>
Liu, C., Köhl, A., and Stammer, D.: Adjoint-based estimation of
eddy-induced tracer mixing parameters in the global ocean, J. Phys.
Oceanogr., 42, 1186–1206, 2012.</mixed-citation></ref>
      <ref id="bib1.bib20"><label>20</label><mixed-citation>
Liu, Y., Liu, Z., Zhang, S., Rong, X., Jacob, R., Wu, S., and Lu, F.:
Ensemble-based parameter estimation in a coupled GCM using the adaptive
spatial average method, J. Climate, 27, 4002–4014, 2014.</mixed-citation></ref>
      <ref id="bib1.bib21"><label>21</label><mixed-citation>
Lorenz, E. N.: Deterministic non-periodic flow, J. Atmos. Sci., 20, 130–141,
1963.</mixed-citation></ref>
      <ref id="bib1.bib22"><label>22</label><mixed-citation>
Lu F., Liu, Z., Zhang, S., and Liu, Y.: Strongly coupled data assimilation
using leading averaged coupled covariance (LACC), Part I: simple model
study, Mon. Weather Rev., 143, 3823–3837, 2015.</mixed-citation></ref>
      <ref id="bib1.bib23"><label>23</label><mixed-citation>
Massonnet, F., Goosse, H., Fichefet, T., and Counillon, F.: Calibration of sea
ice dynamic parameters in an ocean-sea ice model using an ensemble Kalman
filter, J. Geophys. Res.-Oceans, 119, 4168–4184, 2014.</mixed-citation></ref>
      <ref id="bib1.bib24"><label>24</label><mixed-citation>
Stammer, D.: Adjusting internal model errors through ocean state estimation,
J. Phys. Oceanogr., 35, 1143–1153, 2005.</mixed-citation></ref>
      <ref id="bib1.bib25"><label>25</label><mixed-citation>
Taft, B.: Characteristics of the flow of the Kuroshio south of Japan,
University of Tokyo Press, Tokyo, 165–216, 1972.</mixed-citation></ref>
      <ref id="bib1.bib26"><label>26</label><mixed-citation>
Tippett, M. K., Anderson, J. L., Bishop, C. H., Hamill, T. M., and Whitaker,
J. S.: Ensemble Square Root Filters, Mon. Weather Rev., 131, 1485–1490, 2003.</mixed-citation></ref>
      <ref id="bib1.bib27"><label>27</label><mixed-citation>
Tong, M. and Xue, M.: Ensemble Kalman filter assimilation of Doppler radar
data with a compressible nonhydrostatic model: OSS experiments, Mon. Weather Rev., 133, 1789–1807, 2005.</mixed-citation></ref>
      <ref id="bib1.bib28"><label>28</label><mixed-citation>
Whitaker, J. S. and Hamill, T. M.: Ensemble data assimilation without
perturbed observations, Mon. Weather Rev., 130, 1913–1924, 2002.</mixed-citation></ref>
      <ref id="bib1.bib29"><label>29</label><mixed-citation>
Wu, X., Zhang, S., Liu, Z., Rosati, A., and Delworth, T.: A study of impact
of the geographic dependence of observing system on parameter estimation
with an intermediate coupled model, Clim. Dynam., 40, 1789–1798, 2013.</mixed-citation></ref>
      <ref id="bib1.bib30"><label>30</label><mixed-citation>
Yang, X. and Delsole, T.: Using the ensemble Kalman Filter to estimate
multiplicative model parameters, Tellus, 61A, 601–609, 2009.</mixed-citation></ref>
      <ref id="bib1.bib31"><label>31</label><mixed-citation>
Yu, X., Wang, F., and Wan, X.: Index of Kuroshio penetrating the Luzon Strait
and its preliminary application, Acta Oceanol. Sin., 32, 1–11, 2013.</mixed-citation></ref>
      <ref id="bib1.bib32"><label>32</label><mixed-citation>
Zhang, S.: Impact of observation-optimized model parameters on decadal
predictions: simulation with a simple psycnocline prediction model, Geophys.
Res. Lett., 38, 1–5, 2011a.</mixed-citation></ref>
      <ref id="bib1.bib33"><label>33</label><mixed-citation>
Zhang, S.: A study of impacts of coupled model initial shocks and
state-parameter optimization on climate predictions using a simple
pycnocline prediction model, J. Climate, 24, 6210–6226, 2011b.</mixed-citation></ref>
      <ref id="bib1.bib34"><label>34</label><mixed-citation>
Zhang, S. and Anderson, J.: Impact of spatially and temporally varying
estimates of error covariance on assimilation in a simple atmospheric model,
Tellus, 55A, 126–147, 2003.</mixed-citation></ref>
      <ref id="bib1.bib35"><label>35</label><mixed-citation>Zhang, S., Harrison, M., Rosati, A., and Wittenberg, A.: System design and
evaluation of coupled ensemble data assimilation for global oceanic climate
studies, Mon. Weather Rev., 135, 3541–3564, 2007.
 </mixed-citation></ref><?xmltex \hack{\newpage}?>
      <ref id="bib1.bib36"><label>36</label><mixed-citation>
Zhang, S., Liu, Z., Rosati, A., and Delworth, T.: A study of enhancive
parameter correction with coupled data assimilation for climate estimation
and prediction using a simple coupled model, Tellus, 64A, 1–20, 2012.</mixed-citation></ref>

  </ref-list><app-group content-type="float"><app><title/>

    </app></app-group></back>
    <!--<article-title-html>Insights on the role of accurate state estimation in coupled model parameter estimation by a conceptual climate model study</article-title-html>
<abstract-html><p class="p">The uncertainties in values of coupled model parameters
are an important source of model bias that causes model climate drift. The
values can be calibrated by a parameter estimation procedure that projects
observational information onto model parameters. The signal-to-noise ratio
of error covariance between the model state and the parameter being estimated
directly determines whether the parameter estimation succeeds or not. With
a conceptual climate model that couples the stochastic atmosphere and
slow-varying ocean, this study examines the sensitivity of state–parameter
covariance on the accuracy of estimated model states in different model
components of a coupled system. Due to the interaction of multiple timescales,
the fast-varying <q>atmosphere</q> with a chaotic nature is the major
source of the inaccuracy of estimated state–parameter covariance. Thus,
enhancing the estimation accuracy of atmospheric states is very important
for the success of coupled model parameter estimation, especially for the
parameters in the air–sea interaction processes. The impact of
chaotic-to-periodic ratio in state variability on parameter estimation is
also discussed. This simple model study provides a guideline when real
observations are used to optimize model parameters in a coupled general
circulation model for improving climate analysis and predictions.</p></abstract-html>
<ref-html id="bib1.bib1"><label>1</label><mixed-citation>
Anderson, J.: An ensemble adjustment Kalman filter for data assimilation,
Mon. Weather Rev., 129, 2884–2903, 2001.
</mixed-citation></ref-html>
<ref-html id="bib1.bib2"><label>2</label><mixed-citation>
Anderson, J.: A local least squares framework for ensemble filtering, Mon. Weather Rev., 131, 634–642, 2003.
</mixed-citation></ref-html>
<ref-html id="bib1.bib3"><label>3</label><mixed-citation>
Annan, J. D., Lunt, D. J., Hargreaves, J. C., and Valdes, P. J.: Parameter estimation in an atmospheric GCM using the
Ensemble Kalman Filter, Nonlin. Processes Geophys., 12, 363–371, <a href="http://dx.doi.org/10.5194/npg-12-363-2005" target="_blank">doi:10.5194/npg-12-363-2005</a>, 2005.
</mixed-citation></ref-html>
<ref-html id="bib1.bib4"><label>4</label><mixed-citation>
Barth, A., Canter, M., Schaeybroeck, B. V., Vannitsem, S., Massonnet, F.,
Zunz, V., Mathiot, P., Alvera-Azcarate, A., and Beckers, J.: Assimilation of
sea surface temperature, sea ice concentration and sea ice drift in a model
of the Southern Ocean, Ocean Modell., 93, 22–39, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib5"><label>5</label><mixed-citation>
Dee, D. P.: Bias and data assimilation, Q. J.  Roy. Meteorol. Soc., 131.613, 3323–3344, 2005.
</mixed-citation></ref-html>
<ref-html id="bib1.bib6"><label>6</label><mixed-citation>
Dee, D. P. and Silva, A. M. D.: Data assimilation in the presence of
forecast bias, Q. J.  Roy. Meteorol. Soc., 124.545,
269–296, 1998.
</mixed-citation></ref-html>
<ref-html id="bib1.bib7"><label>7</label><mixed-citation>
DelSole, T. and Yang, X.: State and parameter estimation in stochastic
dynamical models, Physica D, 239, 1781–1788, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib8"><label>8</label><mixed-citation>
Evensen, G.: Sequential data assimilation with a nonlinear
quasi-geostrophic model using Monte Carlo methods to forecast error
statistics, J. Geophys. Res., 99, 10143–10162, 1994.
</mixed-citation></ref-html>
<ref-html id="bib1.bib9"><label>9</label><mixed-citation>
Gharamti, M. E., Kadoura, A., Valstar, J., Sun, S., and Hoteit, I.: Constraining
a compositional flow model with flow-chemical data using an ensemble-based
Kalman filter, Water Resour. Res., 50, 2444–2467, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib10"><label>10</label><mixed-citation>
Gnanadesikan, A.: A simple predictive model for the structure of the oceanic
psycnocline, Science, 283, 2077–2079, 1999.
</mixed-citation></ref-html>
<ref-html id="bib1.bib11"><label>11</label><mixed-citation>
Grinsted, A., Moore, J. C., and Jevrejeva, S.: Application of the cross wavelet transform and wavelet coherence
to geophysical time series, Nonlin. Processes Geophys., 11, 561–566,
<a href="http://dx.doi.org/10.5194/npg-11-561-2004" target="_blank">doi:10.5194/npg-11-561-2004</a>, 2004 (data available at: <a href="www.glaciology.net/wavelet-coherence" target="_blank">www.glaciology.net/wavelet-coherence</a>, last access: 2 March 2017).
</mixed-citation></ref-html>
<ref-html id="bib1.bib12"><label>12</label><mixed-citation>
Han, G., Wu, X., Zhang, S., Liu, Z., and Li, W.: Error covariance estimation
for coupled data assimilation using a Lorenz atmosphere and a simple
psycnocline ocean model, J. Climate, 26, 10218–10231, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib13"><label>13</label><mixed-citation>
Houtekamer, P. L. and Mitchell, H. L: Data assimilation using an ensemble
Kalman filter technique, Mon. Weather Rev., 126, 796–811, 1998.
</mixed-citation></ref-html>
<ref-html id="bib1.bib14"><label>14</label><mixed-citation>
Jackson, C., Sen, M. K., and Stoffa, P. L.: An efficient stochastic Bayesian
approach to optimal parameter and uncertainty estimation for climate model
predictions, J. Climate, 17, 2828–2841, 2004.
</mixed-citation></ref-html>
<ref-html id="bib1.bib15"><label>15</label><mixed-citation>
Jazwinski, A.: Stochastic Processes and Filtering Theory, Academic Press,
Cambridge, 1970.
</mixed-citation></ref-html>
<ref-html id="bib1.bib16"><label>16</label><mixed-citation>
Jung, Y., Xue, M., and Zhang G.: Simultaneous estimation of microphysical
parameters and the atmospheric state using simulated polarimetric radar data
and an ensemble Kalman filter in the presence of an observation operator
error, Mon. Weather Rev., 138, 539–562, 2010.
</mixed-citation></ref-html>
<ref-html id="bib1.bib17"><label>17</label><mixed-citation>
Leeuwenburgh, O.: Estimation and correction of surface wind-stress bias in
the Tropical Pacific with the Ensemble Kalman Filter, Tellus A, 60,
716–727, 2008.
</mixed-citation></ref-html>
<ref-html id="bib1.bib18"><label>18</label><mixed-citation>
Li, S., Zhang, S., Liu, Z., Yang, X., Rosati, A., Golaz, J., and Zhao M.: The
Role of large-scale feedbacks in cumulus convection parameter estimation, J.
Climate, 29, 4099–4119, 2016.
</mixed-citation></ref-html>
<ref-html id="bib1.bib19"><label>19</label><mixed-citation>
Liu, C., Köhl, A., and Stammer, D.: Adjoint-based estimation of
eddy-induced tracer mixing parameters in the global ocean, J. Phys.
Oceanogr., 42, 1186–1206, 2012.
</mixed-citation></ref-html>
<ref-html id="bib1.bib20"><label>20</label><mixed-citation>
Liu, Y., Liu, Z., Zhang, S., Rong, X., Jacob, R., Wu, S., and Lu, F.:
Ensemble-based parameter estimation in a coupled GCM using the adaptive
spatial average method, J. Climate, 27, 4002–4014, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib21"><label>21</label><mixed-citation>
Lorenz, E. N.: Deterministic non-periodic flow, J. Atmos. Sci., 20, 130–141,
1963.
</mixed-citation></ref-html>
<ref-html id="bib1.bib22"><label>22</label><mixed-citation>
Lu F., Liu, Z., Zhang, S., and Liu, Y.: Strongly coupled data assimilation
using leading averaged coupled covariance (LACC), Part I: simple model
study, Mon. Weather Rev., 143, 3823–3837, 2015.
</mixed-citation></ref-html>
<ref-html id="bib1.bib23"><label>23</label><mixed-citation>
Massonnet, F., Goosse, H., Fichefet, T., and Counillon, F.: Calibration of sea
ice dynamic parameters in an ocean-sea ice model using an ensemble Kalman
filter, J. Geophys. Res.-Oceans, 119, 4168–4184, 2014.
</mixed-citation></ref-html>
<ref-html id="bib1.bib24"><label>24</label><mixed-citation>
Stammer, D.: Adjusting internal model errors through ocean state estimation,
J. Phys. Oceanogr., 35, 1143–1153, 2005.
</mixed-citation></ref-html>
<ref-html id="bib1.bib25"><label>25</label><mixed-citation>
Taft, B.: Characteristics of the flow of the Kuroshio south of Japan,
University of Tokyo Press, Tokyo, 165–216, 1972.
</mixed-citation></ref-html>
<ref-html id="bib1.bib26"><label>26</label><mixed-citation>
Tippett, M. K., Anderson, J. L., Bishop, C. H., Hamill, T. M., and Whitaker,
J. S.: Ensemble Square Root Filters, Mon. Weather Rev., 131, 1485–1490, 2003.
</mixed-citation></ref-html>
<ref-html id="bib1.bib27"><label>27</label><mixed-citation>
Tong, M. and Xue, M.: Ensemble Kalman filter assimilation of Doppler radar
data with a compressible nonhydrostatic model: OSS experiments, Mon. Weather Rev., 133, 1789–1807, 2005.
</mixed-citation></ref-html>
<ref-html id="bib1.bib28"><label>28</label><mixed-citation>
Whitaker, J. S. and Hamill, T. M.: Ensemble data assimilation without
perturbed observations, Mon. Weather Rev., 130, 1913–1924, 2002.
</mixed-citation></ref-html>
<ref-html id="bib1.bib29"><label>29</label><mixed-citation>
Wu, X., Zhang, S., Liu, Z., Rosati, A., and Delworth, T.: A study of impact
of the geographic dependence of observing system on parameter estimation
with an intermediate coupled model, Clim. Dynam., 40, 1789–1798, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib30"><label>30</label><mixed-citation>
Yang, X. and Delsole, T.: Using the ensemble Kalman Filter to estimate
multiplicative model parameters, Tellus, 61A, 601–609, 2009.
</mixed-citation></ref-html>
<ref-html id="bib1.bib31"><label>31</label><mixed-citation>
Yu, X., Wang, F., and Wan, X.: Index of Kuroshio penetrating the Luzon Strait
and its preliminary application, Acta Oceanol. Sin., 32, 1–11, 2013.
</mixed-citation></ref-html>
<ref-html id="bib1.bib32"><label>32</label><mixed-citation>
Zhang, S.: Impact of observation-optimized model parameters on decadal
predictions: simulation with a simple psycnocline prediction model, Geophys.
Res. Lett., 38, 1–5, 2011a.
</mixed-citation></ref-html>
<ref-html id="bib1.bib33"><label>33</label><mixed-citation>
Zhang, S.: A study of impacts of coupled model initial shocks and
state-parameter optimization on climate predictions using a simple
pycnocline prediction model, J. Climate, 24, 6210–6226, 2011b.
</mixed-citation></ref-html>
<ref-html id="bib1.bib34"><label>34</label><mixed-citation>
Zhang, S. and Anderson, J.: Impact of spatially and temporally varying
estimates of error covariance on assimilation in a simple atmospheric model,
Tellus, 55A, 126–147, 2003.
</mixed-citation></ref-html>
<ref-html id="bib1.bib35"><label>35</label><mixed-citation>
Zhang, S., Harrison, M., Rosati, A., and Wittenberg, A.: System design and
evaluation of coupled ensemble data assimilation for global oceanic climate
studies, Mon. Weather Rev., 135, 3541–3564, 2007.

</mixed-citation></ref-html>
<ref-html id="bib1.bib36"><label>36</label><mixed-citation>
Zhang, S., Liu, Z., Rosati, A., and Delworth, T.: A study of enhancive
parameter correction with coupled data assimilation for climate estimation
and prediction using a simple coupled model, Tellus, 64A, 1–20, 2012.
</mixed-citation></ref-html>--></article>
